Halobacterium sp. NMX12-1: ABSL23_16790
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Entry
ABSL23_16790 CDS
T10641
Name
(GenBank) transcription initiation factor IIB family protein
KO
K03124
transcription initiation factor TFIIB
Organism
hanx Halobacterium sp. NMX12-1
Pathway
hanx03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
hanx00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
ABSL23_16790
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hanx03021
]
ABSL23_16790
Transcription machinery [BR:
hanx03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
ABSL23_16790
Prokaryotic type
Archaeal type
TFB
ABSL23_16790
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
RB_B
Cyclin_C
DZR_2
FYVE
DZR
DUF1272
Motif
Other DBs
NCBI-ProteinID:
XCF18329
UniProt:
A0AAU8CH29
LinkDB
All DBs
Position
pNMX12-1_119:7688..8608
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AA seq
306 aa
AA seq
DB search
MATSEIYETTFDEDVQTESSANQCPECDGRVTTNAVETVCEDCGLVIDEQRIDHGPEWRA
YDDEERERTGAPLTAARHDRGLSTEIGHGTDAHGNELSGQKRRRLARMRREQTRGRWRSK
AERNLAHGLGEVRRLASALELSESIRDQACQLFRSAQSEDLLRGRSIEAIGAASIYGTCR
CNQHPLLLEDVVDAARVESTRVTNAYRTLNRELELPAPPMRPTSFVPRLISALELDHDIR
RHANELAERAEGTALTNGCQPSGVAAACVYLAAQEQGALITQSTVASAAEVSVVTLRSRR
DELQAM
NT seq
921 nt
NT seq
+upstream
nt +downstream
nt
atggcaaccagcgagatctacgagacgacgttcgacgaagatgtacagacggaatcaagt
gcgaaccagtgtcccgagtgcgacggccgagtcacgacgaacgcggtcgagacggtctgc
gaggactgtggcctggtcatcgacgaacagcgcatcgatcacgggccggagtggcgggcg
tacgacgacgaggagcgcgagcgaacgggcgccccactcactgcggcccgccacgatcgc
ggcctgtcgaccgagatcggccacggaaccgatgcacacgggaacgaactctccgggcaa
aaacgccggcggctggcccggatgcgacgtgagcagacccgtggtcgctggcggtcgaaa
gcagaacggaatctcgcacacgggttgggcgaggtgcgccggctggcgagtgcgctcgaa
ctctccgagtcgattcgtgaccaggcgtgccagctcttccggagcgctcagagcgaggat
ctgcttcgtggcagatccatcgaagccatcggtgcagcgagcatctacggtacctgccga
tgtaaccaacacccgctcctcctcgaggatgtcgtcgacgccgccagagtcgagtccact
cgtgtcaccaacgcctaccgaacactgaatcgcgaattagagctcccagcaccaccaatg
cgcccgacgtcattcgttccgcggctgatctcggcgctggagttagaccacgacattcgc
cgacacgcgaacgaactcgcagaacgcgccgaggggacagccctcacgaacggctgtcag
ccatcgggcgtcgcggccgcctgcgtctatctggccgcccaggagcagggcgcgttgatt
acccaatccaccgtcgcgtcggcagcagaggtgtcagtcgtgacgctccgaagccggcgg
gacgaactccaagcgatgtga
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