Halobacterium sp. NMX12-1: ABSL23_17125
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Entry
ABSL23_17125 CDS
T10641
Name
(GenBank) TFIIB-type zinc ribbon-containing protein
KO
K03124
transcription initiation factor TFIIB
Organism
hanx Halobacterium sp. NMX12-1
Pathway
hanx03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
hanx00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
ABSL23_17125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hanx03021
]
ABSL23_17125
Transcription machinery [BR:
hanx03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
ABSL23_17125
Prokaryotic type
Archaeal type
TFB
ABSL23_17125
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Cyclin_C
Trm112p
DUF7351
IBR_1
DZR_2
Motif
Other DBs
NCBI-ProteinID:
XCF18371
UniProt:
A0AAU8CIQ5
LinkDB
All DBs
Position
pNMX12-1_119:79480..80442
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AA seq
320 aa
AA seq
DB search
MMSQEHTQQRSKDKRDHEVKSANDNTCPECQGRVTRNSDSGEATCESCGLVFEDDPIDHG
PEWRAFTSDERDEKSRVGAPTTQLMHDKGLSTTIGWQDKDAYGQAVSGRKRAQLQRLRTW
DERFRTKDAHERNLKQALGEISRMASALGLPESVRETAGVLYRRAVEQNLLPGRSIEGMS
TASLYAAARQHDMPRPLTEFADVSRVEKIRIQRGYRYLSRELGLEIKPEDPTQYIPQFAS
SLDVSDEAERRSRELLEVATNNAVHSGKSPAGLAAAALYAATHLTNEQLTQETVSEVAHV
SRVTIRNRYQELLEVYAQHD
NT seq
963 nt
NT seq
+upstream
nt +downstream
nt
atgatgtctcaagaacatacccagcaacggtcgaaagataaacgagaccatgaggtgaag
tctgctaacgacaacacctgtcccgagtgtcagggccgtgttacccggaacagcgacagc
ggcgaggcgacctgcgaaagctgtgggttggtttttgaagatgatccaatcgaccacggc
ccggagtggcgtgctttcacgtcggacgaacgcgatgaaaaaagtcgggtgggtgcaccg
acgacgcagctgatgcacgacaagggcctgagtacgactatcggctggcaggacaaagat
gcctacggacaggctgtctccggtcgcaaacgtgctcaattacagcgtctccggacgtgg
gacgagcggttccgaacgaaggatgcccacgagcggaatctcaagcaagcgctcggggag
atcagccgtatggcgtccgctctgggacttccggaatcggttcgggaaactgcaggcgtc
ctgtaccggcgtgctgtagagcagaatctgctccccggtcgctcaatagagggtatgtcg
acggcgtcgttgtacgcggctgcccgacagcacgacatgccacggccgctgactgagttc
gctgacgtcagccgtgtcgagaaaatccggatccagcgagggtaccgatatctgtcccgg
gaactcgggctggaaatcaagccggaggatcccacgcaatatatcccgcaattcgcgtca
tcgcttgacgtgagcgacgaagcagaacggcgctctcgagaactgcttgaggtagctaca
aataatgccgtccacagtgggaaaagtccagccgggttggcggctgccgcgctatatgct
gcgacccacctcacgaacgagcagctcacacaggagacggtgagtgaggtcgcccacgtg
agtcgagtcacgatccggaatcgataccaagagcttctcgaggtgtacgcgcagcatgac
tga
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