Halobacterium sp. NMX12-1: ABSL23_17200
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Entry
ABSL23_17200 CDS
T10641
Name
(GenBank) TFIIB-type zinc ribbon-containing protein
KO
K03124
transcription initiation factor TFIIB
Organism
hanx Halobacterium sp. NMX12-1
Pathway
hanx03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
hanx00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
ABSL23_17200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hanx03021
]
ABSL23_17200
Transcription machinery [BR:
hanx03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
ABSL23_17200
Prokaryotic type
Archaeal type
TFB
ABSL23_17200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
DUF8122
Cyclin_C
zf_Rg
DZR_2
DUF7560
VG15
IBR_1
DZR
Zn_ribbon_IS1595
Zn_ribbon_tTFIIB
Zn_ribbon_LysW
Cas12f1-like_TNB
Zn_ribbon_PADR1
DUF8054_C
Motif
Other DBs
NCBI-ProteinID:
XCF18302
UniProt:
A0AAU8CJK4
LinkDB
All DBs
Position
pNMX12-1_119:95347..96276
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AA seq
309 aa
AA seq
DB search
MTKPPQNQGTEKRSVCPECGGQIRYDDSQREAACQRCGLVTDEQTIDHGPEWRSFTDEQR
QNKSRVGAPTTPLMHDKGLSTTISWQDKDARGQYLSSRKRERLQRLRRWDERFRTKDASE
RNLKQAFDEIDRMASALGLPEAVRETAGILYRRAVEEGLLPGRSIEGMATAALYASARQH
QTPRSPFVVETVSRVEKKRFQRAYRYLSRELSLEIEPESPDQHLPRLASSLDVTDEALRR
ARELLNVAQRNAVHSGKSPVGMAASALYAATYLTNEKLTQETVSSAASVSKVTIRTRYQE
LLDVYAEHE
NT seq
930 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaaccgccgcaaaatcagggaacagaaaaacgatcagtctgcccggagtgtggt
gggcagattcgttacgacgattcgcagagagaggcggcgtgtcaaagatgtggcctagtc
accgacgaacagacgatcgaccatggtccagagtggcggtcgtttactgacgaacaacga
cagaataagagtcgggtcggggcaccgacgacgccgttgatgcatgataagggcctcagc
acgactatcagttggcaagacaaagacgcacgcggacaatatctgtccagtcgcaaacga
gagcgactgcaacgtctacgccggtgggacgaacgattccgcacgaaggatgcctctgag
cggaatctcaaacaggcattcgacgaaattgatcgaatggcatcggctctcggcttgcct
gaggcagttcgtgagacggcgggtattctctaccggcgtgccgtcgaggaagggctactt
ccgggccgttctatcgaaggtatggcaaccgctgcactgtacgcgagcgcgcgacagcac
caaactccgcgatcccctttcgtcgttgaaacggtaagtcgagttgaaaagaaacgattt
cagcgagcataccgctacctctcccgggagcttagccttgaaatcgaaccggaatccccg
gatcaacatctgccgcgactcgcgtcgtcacttgacgtgaccgacgaggcactccgacgt
gcgcgagaactgctcaacgttgcccaacgcaacgccgtccacagtgggaaaagcccagta
ggcatggcggcatccgcgctgtacgcagcaacgtatcttacaaacgagaaactcacccaa
gagactgtgagttcagcggcaagcgtgagcaaggtcacgattcgaactcgctaccaagaa
cttctcgatgtctacgccgagcacgagtaa
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