Halomonas sp. NyZ770: LG409_00805
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Entry
LG409_00805 CDS
T10914
Symbol
rapA
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
hany Halomonas sp. NyZ770
Brite
KEGG Orthology (KO) [BR:
hany00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hany03021
]
LG409_00805 (rapA)
Transcription machinery [BR:
hany03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
LG409_00805 (rapA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RapA_C
Tudor_1_RapA
Tudor_RapA
Helicase_C
SNF2-rel_dom
ResIII
DEAD
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
UDM07493
LinkDB
All DBs
Position
complement(178200..181145)
Genome browser
AA seq
981 aa
AA seq
DB search
MSDFSPGQRWISDGEAELGLGTVLNCDARSVTILFSASQETRTYNTRQAPLTRVMFGSGD
RVLSADGWQMIVDDSKESRGLITYIGEDSDGNLRELPEARLADTMQFDQARDRLLTGQVD
RNDWFDLRFRTLHHFQRIEQHSALGFAGPRIDLIPHQLYIADEVARRHAPRVLLADEVGL
GKTIEAGLILHRLLLAGRVERALILVPDSLTHQWLVELLRRFSLTVTLLDEHQSQAHGSA
NPFESAQLVLASQGWLFANRHRQEQALASRFDLLIVDEAHHLDWHPETSGPGYLCVEQLA
AEIPGLLLLTATPEQMGQESHFARLRLLDPERYHDIERFKDEEQHYVAVASAIDALEELP
QTPSARERVATIADDRDSQALLATLCNAEASSEQQDAARAQLRDALLDRHGTGRVMFRNS
RRHVGGFPERRLHLTKLELPSAYRRVLRRLERDEDYLDELLIETGMDHPDVLIYPDAMYR
ELSNDPLNGEPWWHIDPRVNWLLEKLSDDSEDGFANDKVLVIAHHRETAEGLAEGLRVLG
GYQAPVFHEGLSLVERDRAAAAFADEEDGCQVLVCSEIGSEGRNFQFCRHLVMFDMPQHP
DQLEQRIGRLDRIGQRHAIELHVPSFIGSPGERLQRWYDEGMAAFSAPHGIGSDLFDAFG
DALADALLDDEALAEIIDETHAMFTAKLAERDAGRNRLLELNACRPAQAQQVIDAVRELD
EDPALPRYVERALDIFGVDSQEIGNGLLHLQPSQHMLDGLPGLVKGEEGFSATYSRAQAL
ARDDVQRLSWEHPLLREMMGRILDGTMGNTALALLRHPAIPSGRLMAELIFRTHCPAPKA
LHLNRFLPPTAVRVLLDESGANLTSKISFTGLGKNLQKVNKSLARDLIKSRHDQLRDLLT
QGESEAERELPSIVEAAETRMRAQLDAELARLTALAEHNPAVRSEELEALKQERQALSDA
IENTRLRLDSVRVIITVDPNA
NT seq
2946 nt
NT seq
+upstream
nt +downstream
nt
atgagcgatttttctcccggccagcgctggattagcgacggtgaggccgagcttgggctt
ggcaccgtgcttaactgcgacgcccgtagcgttaccatcttgttcagtgccagccaggaa
acccgcacctacaacacccgccaggcgcccctcacccgagtcatgttcggcagcggtgac
cgggtcctgtcagccgacggctggcagatgatcgtggacgacagcaaagagagccgtggc
ctgatcacctatatcggtgaagacagcgacggcaacctgcgcgaactgcccgaagcacgc
ctggccgacaccatgcagttcgaccaggcccgtgaccgcctgctgaccggccaggtcgat
cgcaacgactggttcgacctgcgttttcgtaccctgcatcactttcagcgtattgaacag
cacagcgccctggggtttgccgggccgcgcatcgacctgattccccaccagctctatatc
gccgacgaagtcgcacgccgccacgcccccagggtgctgctggccgatgaagtgggactt
ggcaagaccattgaagcaggcttgatcctccaccgcctgctgttggcaggccgcgtagag
cgcgcgctgattctggtacccgatagcctgacccaccagtggctggtggagctgttgcgc
cgcttctcgctgaccgtcacgctgctcgacgagcatcagagccaggcccacggcagcgcc
aatccgttcgagagcgcccagctggtgctggccagccagggctggctgtttgccaatcgt
caccgtcaggaacaggccctggccagccgtttcgacctgctgatcgtcgacgaggcgcat
cacctggattggcacccggagaccagcggccccggctacctgtgcgtggagcagctggcc
gccgagatccccggcctgctgctgctcaccgccacccccgagcagatgggccaggagagc
cactttgcgcggctacgcctgctggacccggagcgctaccacgacatcgagcgcttcaag
gacgaagagcagcactacgtcgccgtggccagcgccatcgatgcgctggaagaacttccc
cagacacccagcgcccgcgagcgcgtggccaccatcgccgacgaccgcgacagccaggcc
ctgctggcgacgctgtgcaacgccgaggccagctctgaacagcaggatgcggcccgtgcc
caactgcgcgatgcgctgctcgaccgtcacggcaccgggcgcgtcatgttccgcaacagc
cgacgccacgtgggcggcttcccggagcggcggctgcacctgaccaagctggagctgccc
tccgcctatcgccgagtgctgcgccgcctggagcgcgacgaggactatctggacgagctg
ctcatcgaaaccggcatggaccacccggacgtactgatctacccggatgccatgtaccgc
gagctgagcaatgacccactgaacggtgaaccctggtggcatatcgacccccgggtcaac
tggctgctggaaaagctcagcgacgacagcgaagacggttttgccaacgacaaggtgctg
gtcattgcccaccaccgcgagaccgccgaagggctggccgaaggcctgcgtgtgctgggc
ggctaccaggcaccggtattccacgaagggctgtcgctggtggagcgcgaccgcgccgcc
gccgccttcgccgacgaggaagatggctgccaagtgctggtgtgctccgaaatcggctcc
gaaggccgcaacttccagttctgtcgtcatctggtgatgttcgacatgccccaacacccg
gaccagctggagcagcggattggccgcctcgaccggattggccaacgccacgccatcgag
ctgcacgtgcccagcttcatcggcagcccgggggagcggctgcagcgctggtacgacgaa
ggcatggccgctttcagtgccccccacggtattggcagcgacctgttcgacgcctttggc
gacgcgctggccgatgcgctgctcgacgatgaagcgctcgccgagatcatcgacgaaacc
cacgcaatgttcaccgccaaactggccgagcgcgacgcgggccgcaaccggttgctggag
ctgaacgcctgccgcccggcccaggcgcaacaggtcattgatgcggtacgtgagttggat
gaagacccggcactgccccgctacgtggagcgtgcgctggatatcttcggggtcgatagc
caggaaattggcaatggcctgctgcacctgcagcccagccagcacatgctggacgggctg
ccggggctggtcaaaggggaagagggcttctctgccacctacagccgtgcccaggccctg
gcgcgggatgacgtgcaacgcctctcctgggagcacccgctactgcgcgagatgatggga
cgcattctggatggcaccatgggcaatactgccctggcgctgctgcgccatccggccatt
cccagtggacgactgatggccgagctgatcttccgcacccactgcccggcgcctaaagcg
ctgcacctgaaccgctttttgccccccacggccgtccgggtactgctggatgagtccggg
gccaatctgaccagcaagatctcctttaccgggctgggcaaaaatctgcagaaggtcaac
aagtcgctggcccgtgacctgatcaagagccgtcatgaccagctgcgtgacctgctgacc
caaggggagagcgaggccgagcgggagctgcccagcatcgtggaagccgccgaaacgcgc
atgcgtgctcagctggatgccgagctggcccgcctgacggcgctggcagagcacaacccg
gcggtgcgcagcgaggagctggaagccctcaagcaggagcgtcaggcgctcagcgatgcc
atcgaaaacactcgcctgcggctcgactcggtccgggtcatcatcaccgtggacccgaac
gcctag
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