Halomonas sp. NyZ770: LG409_05505
Help
Entry
LG409_05505 CDS
T10914
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
hany Halomonas sp. NyZ770
Pathway
hany03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hany00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LG409_05505 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hany03019
]
LG409_05505 (rnr)
03016 Transfer RNA biogenesis [BR:
hany03016
]
LG409_05505 (rnr)
Enzymes [BR:
hany01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LG409_05505 (rnr)
Messenger RNA biogenesis [BR:
hany03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LG409_05505 (rnr)
Transfer RNA biogenesis [BR:
hany03016
]
Prokaryotic type
tRNA degradation factors
LG409_05505 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
UDM08361
LinkDB
All DBs
Position
1163297..1165702
Genome browser
AA seq
801 aa
AA seq
DB search
MKYWTLSDDPHAEREAKNYDNPAPSREYLLAALESYGKPITHENMSRMLGIEDEDHLEAV
RRRMAAMERDGQVLRDRRGAYALIDKLDLIKGKVLGHRDGFGFVLRDDGKKPDLLLPPRQ
MRRVFHGDHVLVRISGRDRRGRDEATIAEVIARNTETMVGVYRSNTPEFGILIPENPRIT
QEVIIPHTASGGAKDGQVISARIVQQPATRVQPVGEVIEVLGERMDPGMEIDIAIRSYDI
PAEFPPEVLDQISEISAEVLEADKQHRVDLRDLPLVTIDDESAKDFDDAVCAWKTKSGSW
KLVVAIADVSHYVRPGTALDDEARTRGNSVYFPGQVVPMLPELLSNGLCSLNPHVDRLVM
VCEMNISKTGAISRYSFYEAVMNSHARLTYNKVAAMLDGESEEGEALRREHAELVKPLKN
LHELYGLLRAAREERGAIDFDTTETAIIFNEERKIEKIVPRSRNDAHKLIEECMLAANVA
TARFLDKHDLPALYRIHERPTPERLDKLRLFLSELGLSVGGGDEPTPQDYQALREAIADR
PDADIIQTVMLRSMNQAVYSPQNEGHFGLAYQAYAHFTSPIRRYPDLLVHRAIRSVIRGP
RQTATVVRVEGAPVDPPSKWCPYTFEQMLELGEHCSMTERRADEATRDVESWLKCEFMSD
KLGETFEGTIASVTQFGLFVRLDDFFVEGLVHVTSLPSDYYHYEAEKHRLKGERTGTTYR
LGDGLTVQVARVDMDDRKIDFGLADDKPRPQRQPRKRRSESSGEKGAGAGAGAKAAAGEQ
PARRGPRRTRSGSRKPSSKKG
NT seq
2406 nt
NT seq
+upstream
nt +downstream
nt
atgaagtactggacgttgagtgatgatccgcacgccgagcgcgaggcgaagaattacgat
aacccggctcccagccgtgaatacctgttggctgccctggaaagctatggcaagccgatt
acccatgaaaacatgagccgcatgctgggcatcgaagacgaagaccatctggaagcggtg
cgtcggcgtatggcggccatggagcgcgacggccaggtgctgcgcgaccgtcgaggcgcc
tatgcactgatcgacaagctcgacctgatcaagggcaaggtgctgggccatcgggatggg
tttggcttcgtgctgcgtgatgacggcaagaagccggacctgctgctgccgcctcgtcag
atgcgccgcgtcttccacggagaccatgtgctggtgcgcatcagtgggcgagaccgtcgc
ggccgcgacgaagccacgattgccgaagtgattgcccgcaataccgagaccatggtgggc
gtataccgcagcaatacgccggaattcgggattctcattcccgaaaacccgcggattacc
caggaagtgatcatcccgcacaccgccagcggtggtgccaaggatggtcaggtgatctca
gccaggatcgtccagcagcccgccactcgggttcagccagtgggtgaagtgatcgaagtg
ctgggggagcgtatggaccccggcatggaaatcgacatcgccatccgcagctacgacatt
cccgccgagtttccgccggaggtattggatcagatcagcgaaatctccgctgaagtgctg
gaagccgacaagcagcaccgcgtcgatctgcgcgacctgccgctggtgaccatcgacgac
gaatccgccaaggatttcgacgatgcggtgtgtgcctggaagaccaagtccggtagctgg
aagctggtcgtcgcgattgccgacgtttctcattatgtgcgccctggtaccgcgctggat
gacgaagcgcgcacccgcggcaactcggtctacttcccggggcaagtggtgcccatgctg
cccgagctgctttccaacggtctttgttcattgaatccgcacgtcgaccggctggtgatg
gtgtgcgaaatgaacatttccaagaccggtgccatcagccgctactccttctatgaagcc
gtgatgaattcccatgcccgactcacctataacaaggtggcggccatgctggacggcgag
agtgaagaaggggaggcgctgcgtcgggagcacgccgagctggtcaagccgctcaagaac
ctgcatgagctgtacggcctgctgcgcgctgcccgggaagagcgtggggcgatcgacttc
gataccacggaaacggcgatcatcttcaatgaagagcgcaagatcgagaagatcgtgccg
cgcagccgtaatgatgcccacaagctgatcgaggagtgcatgctggccgccaacgtggcg
acggcgcgtttcctcgacaagcacgacctgccggcgctgtatcgtatccacgagcgtcca
acgcctgagcggctcgacaagctgcgcctgttcctgagtgagctggggctttcggtgggc
ggcggcgacgagccgacgcctcaggattaccaggcactgcgggaagcgattgccgaccgc
ccggatgccgacatcatccagaccgtgatgctgcgctcgatgaatcaggcggtctattcg
ccgcagaacgaggggcacttcggtcttgcttaccaggcctatgcccatttcacgtcgccc
attcggcgctatcctgacctgctggtgcatcgggccattcgctcggtgattcgcgggccg
cgtcagaccgccaccgtggtgcgggtagagggtgcgccggtggatccgccgagcaagtgg
tgcccctacaccttcgagcagatgctggagctgggtgaacactgctccatgaccgagcgg
cgggccgatgaagccacccgtgacgtggagagctggctcaagtgcgaattcatgtcggac
aagctgggcgaaacctttgagggcaccatcgcctcggtgacccagttcgggctcttcgtg
cgtctcgatgacttctttgtggaagggctggtgcacgtcacgtcgctgccttccgactac
taccactacgaagccgagaagcatcgtctcaagggtgagcgcaccggcaccacgtatcgc
ctgggcgatggcctgaccgtgcaagtggcgcgggtggacatggatgatcgcaagatcgac
tttggtcttgccgatgacaagccgcgcccgcagcgtcagccgcgcaagcgtcgtagtgaa
agctctggtgaaaaaggcgctggagcaggagcaggagcaaaggcggctgccggtgagcag
cccgcccgtcgtggcccgcgccgtacgcgcagcgggtcgcgtaaaccatcttcgaaaaag
ggttga
DBGET
integrated database retrieval system
