Halomonas sp. NyZ770: LG409_07285
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Entry
LG409_07285 CDS
T10914
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
hany Halomonas sp. NyZ770
Pathway
hany03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hany00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LG409_07285 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hany03019
]
LG409_07285 (rne)
03009 Ribosome biogenesis [BR:
hany03009
]
LG409_07285 (rne)
Enzymes [BR:
hany01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
LG409_07285 (rne)
Messenger RNA biogenesis [BR:
hany03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LG409_07285 (rne)
Ribosome biogenesis [BR:
hany03009
]
Prokaryotic type
rRNA processing factors
LG409_07285 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
UDM08701
LinkDB
All DBs
Position
complement(1594625..1597978)
Genome browser
AA seq
1117 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYRGKITRVEPSLEAAFVDF
GAERHGFLPLKEISREYFIKDVSGRPNIKEVLKEGQEVIVQVDKEERGNKGAALTTFISL
AGRFLVLMPNNPRAGGISRRIEGDDRSQLKDAMGQLTVPDKMGLIVRTAGIGRSSEELQW
DLDYLVQVWESITTESAKRPAPFLIYRESNVIIRAMRDYLRQDIGEVLIDSPDIHAEALA
FIRQVMPSYQQKIKLYADEVPLFSRFQIESQIETAYQREVKLPSGGSIVIDHTEALVSID
INSARATRGSDIEETALQTNTEAADEIARQLRLRDIGGLVVIDFIDMGPARNQREVENRM
RDALKLDRARVQIGRISRFGLMEMSRQRLRPSLGETSGVVCPRCNGQGTIRDVRSLSLSI
MRLIEEEAMKERSAQIRAILPVPVATYLLNEKRSVLADIESRQGVRVVILPSPDMDTPHY
DVQRLRDDHLDEDDSHTLSSFELSTDTEIGKEPPPSFAAPAQRAEAAVKSIAHNAPAPES
LQTEEAPAKPAAAVAPAEQPSVLGRFIRGFAKLLGGDETSTTASQEASSTNRKPEQPAAP
SRPPRNERRQKPAQERQSQERQPQERSAPERQENSASRDQRNETVKAPAARNDDANDKRS
GPSRTRNRRRHPQQEDGRAQESTPRNPRQKETAKESSQNDAASSAPQPEQRREKPRDNKP
KHDDSRSEAVQQDEPQKDDGKPKRTRNNPRQRSRKQALSPQAEAEQLKLQAEAQQAPEEA
PAPAEADAETPAKKAASAPETATQATAAQETATQEPAAQSPNEAAEAHTDTRQEATEEAA
AEDTTATARASSADKARKSTRQRRQPAIRDEAAKEANASGDDNDTPAAATEEPTAPREEQ
PTSSTAQEPSAAVEKKPSAVVEEEPSAAVEKEPSAVFAEKSSAVTEEKPSTTVAEAPSAD
ESQSSATTEEPSAVVEKEPSAVVEEKSSAVVEEKSSAVVEEKVSAAVEEEPSKASSAVAA
EDTSAATEAQSSVTTEEKPATAEEQAPTEAAQERSTPAAQNAAAEKAPEAPQAAADANAS
GEPAADEEASKPRRRRRRAHNDPREQRKQQAQQNSPE
NT seq
3354 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggatgcttattaatgcgacccagcccgaagagctgcgggtcgccctggtagac
ggacagcgcctttacgatctggatatcgagtccggcgcacgcgaacagaagaaagccaac
atctaccggggcaaaatcacccgggtagaaccctccctcgaagccgccttcgtcgacttt
ggcgccgagcgccacggctttctgccgctgaaagagatctctcgcgaatacttcatcaag
gatgtttcgggccgccccaacatcaaggaagtattgaaagagggccaggaagtcatcgtc
caggtagacaaggaagagcgtggcaacaagggcgctgccctgaccaccttcatcagcctg
gccggacgctttttggtactgatgcccaacaaccctcgtgccggtggcatatcgcggcgt
atcgaaggcgatgaccgcagccagctcaaggatgccatgggccagctgacggtacccgac
aagatgggcctgatcgtgcgtaccgccggcattggccgcagctccgaggagctgcagtgg
gacctggactacctggtacaggtgtgggaatcgatcaccaccgagtccgccaagcgccct
gcgccttttttgatctaccgcgaatccaacgtcatcatccgcgccatgcgcgactacctg
cgccaggacatcggcgaggtgctgatcgacagtcccgacatccacgccgaggcgctggcg
ttcatccgccaggtgatgccttcctaccagcaaaagatcaagctgtatgccgatgaagtg
ccgctgttctcgcgcttccagatcgaatctcagatcgaaacggcctaccagcgggaagtg
aagctgccctccggcggctccatcgtcatcgatcacaccgaagcgctggtctccatcgac
atcaactcggcccgcgccacccgcggcagcgatatcgaagagaccgcactgcagaccaac
accgaagccgccgacgagattgctcgccagctccgcctgcgcgacatcggtgggctagtg
gtcatcgatttcatcgacatgggccctgcccgcaaccagcgtgaagtcgaaaaccgcatg
cgtgatgcgctcaagctggatcgcgcccgcgtacagatcggccgcatttcgcgcttcggc
ctgatggaaatgtcgcgccaacgtctgcgcccctcgctgggtgaaaccagcggcgtggtc
tgcccgcgctgcaacggccagggcaccatccgcgatgtgcgctcgctgtcgctctccatc
atgcgcctgatcgaagaagaggccatgaaagagcgcagcgcccagatccgcgctatcctg
cccgtgccggtcgccacttatctgctcaacgaaaagcgcagcgtgctggcggatatcgag
tcacgccagggcgtacgcgtggtcattctgcccagcccggacatggacaccccgcactac
gacgttcagcgcctgcgcgatgaccacctggacgaagacgacagccacaccctgtcgagc
ttcgagctttccacggacaccgagattggcaaagagccgcctcccagcttcgcggctccg
gctcagcgggcagaagccgcggtcaagagcatcgctcacaacgctccggcccccgagtcg
ctgcaaaccgaagaagcgcccgccaaaccagccgcagccgtggcgcccgcagaacagccc
agcgtactgggccgcttcattcgcggttttgccaaactgctgggtggcgatgagaccagc
acgacggcctctcaggaagccagctcgacgaaccgcaagcccgagcagccggcagcccca
agccgcccgccgcgcaatgagcgtcgccagaagcctgcgcaagagcgccagtctcaggag
cgccagccccaggagcgttcagcacccgagcgtcaggaaaacagcgcctcacgcgaccag
cgcaacgagaccgtcaaggcacctgctgcccgcaacgacgatgcaaacgacaagcgcagc
ggccctagccgcacacgcaaccgtcgccgtcatccgcagcaggaagatggccgggctcag
gaaagcacgccccgcaacccgcgtcagaaagagactgccaaggagtcgtcgcagaacgat
gctgccagcagcgcaccgcagccggaacagcgtcgcgagaaaccccgcgacaacaaaccc
aagcacgacgatagccgctcggaggccgttcagcaggacgagccgcaaaaggatgacggc
aaaccgaagcgcacgcgcaacaacccgcgccagcgttcacgcaagcaggcactgagccca
caggccgaagccgagcagttgaagctccaggcagaagcccagcaggcacccgaggaagcc
cctgccccagcggaggcagatgctgaaacgcctgcaaagaaagccgcgtcagcgccagaa
acggcgactcaagcaaccgctgcccaagagacagccacgcaagagcccgcggctcaatcg
ccaaacgaagcggcagaagcgcacactgacacacgtcaggaggccaccgaagaggccgcg
gcagaagacaccacggccaccgctcgcgccagcagtgcggacaaagcacgcaagtcaacg
cgccagcgccgtcaacctgccattcgcgacgaagcggccaaggaagccaacgcgtctgga
gacgacaacgatacccccgccgcagccacagaagagccgacagcgccacgtgaggaacag
ccaacctcgtcgacggctcaagagccttcagcggcggtagagaaaaaaccctcagccgtg
gtcgaagaagagccttcagcggcggtagagaaagagccctcagcggtgttcgcagaaaag
tcctcagcggttactgaagaaaagccttcaacgaccgtggcagaagcaccttctgccgat
gagagccaatcttccgccactactgaagagccttcagcggtagtagagaaagagccttcg
gcggtggttgaagagaaatcttctgcggtggttgaagaaaaatcttctgcagtagttgaa
gaaaaagtctcagcagccgttgaggaggagccttcaaaagcgtcttccgcagtagcagca
gaagacacctcagcagccactgaagcgcaatcttccgtcaccactgaggaaaagcccgcc
acggccgaggagcaagcgcccacggaagcggctcaggagcgctcgacgcctgctgcacaa
aacgcagcagcagagaaagcccccgaagcccctcaggcagcggccgacgccaatgccagt
ggcgagcctgccgctgacgaggaggcctccaagccacgtcgtcgccgccgccgggctcat
aacgacccgcgtgaacagcgcaagcagcaggcccagcaaaactcacccgagtaa
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