Halomonas sp. NyZ770: LG409_07480
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Entry
LG409_07480 CDS
T10914
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
hany Halomonas sp. NyZ770
Pathway
hany03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hany00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LG409_07480 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hany03019
]
LG409_07480 (rhlB)
Enzymes [BR:
hany01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LG409_07480 (rhlB)
Messenger RNA biogenesis [BR:
hany03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LG409_07480 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
Utp25_C
Imm42
Motif
Other DBs
NCBI-ProteinID:
UDM08736
LinkDB
All DBs
Position
1633885..1635159
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AA seq
424 aa
AA seq
DB search
MSESEQITASDQNRKPKRRRRKPRRRQSNWDLRQFQVPAVAGKWRFHDFDLPLPLMRAIH
AQGYEYCTPIQAEALRHTLLGGDIVGKAQTGTGKTAAFLISVLAYFLEEPAPDGQKPGAP
RALIIAPTRELALQIEKDAKALARFTSLNVASVVGGMDYQKQRESLGKKLDILVATPGRL
LDFHQKRDIDLSETEVLVLDEADRMLSMGFIPDVKRIIRYTPKKEERQTFLFSATFTDDI
LNLASQWTQEPAHVEIEVTVENQADIDQRVYLVSDDDKQRLLVKLLEQESFERVMVFGNR
RDLVRKLDDLLKKAGVSAAMLSGDVPQNQRIKTLESFREGEIQVLVATDVAGRGIHIEDV
SHVINYTLPEDPEDYVHRIGRTGRAGAKGVSISFVGEEDAFSLPEIERYINGKLPCEHPP
EGML
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atgagcgagtcggaacagatcacagcatcggaccagaaccgcaagcctaaacgccgtcgt
cgcaagccgcgtcgtcgtcagtcgaactgggatcttcgtcagtttcaggtgcccgccgtt
gccggcaagtggcgcttccatgactttgatctgccgctgcccttgatgcgcgctattcat
gcccaaggctatgaatattgcactcccattcaggcagaggcgctgcgccacacgctgctg
ggtggcgacattgtgggcaaggcccagacgggcactggcaagaccgctgccttcctgatt
tcagtgctggcctacttcctggaagagcccgcgccggacggtcagaagccgggggctccc
cgtgcgctgatcatcgcccccacccgcgaactggcgctgcagatcgagaaagacgccaag
gcgctcgcccgcttcacgtcgttgaacgtggccagcgtggtcggtggcatggattaccag
aaacagcgtgagagcctcggcaagaaactcgatattttggtggccacgcctggccgtctg
ctcgacttccatcagaagcgcgatatcgacctgtccgaaaccgaagtgctggtgctcgat
gaagcggatcgcatgctttctatggggttcatcccggatgtgaagcgcatcatccgctac
acccccaagaaagaggagcgtcagacgttcctgttttcggccaccttcaccgacgacatt
ctcaacctggccagccagtggacgcaggaaccggcccatgtcgagatcgaagtcacggta
gagaatcaggccgatatcgaccagcgcgtatacctggtgtcggatgacgacaagcagcgc
ctgttggtcaagctgctggagcaggagagcttcgagcgggtcatggtgttcggcaaccgt
cgggatctggtgcgcaaactcgatgacctgctgaaaaaggcaggcgtgagtgccgccatg
ctgtcgggtgatgtgccccagaatcagcggatcaagacgctggaaagcttccgcgaaggc
gagatccaggtgctggtagccaccgatgtggccggtcgtggcatccatatcgaagacgtc
agccacgtgatcaactacaccctgccggaagacccggaagactacgtgcaccgtattggc
cgcaccggtcgtgccggtgccaaaggggtatcgatcagcttcgtgggtgaagaagacgcc
ttctcgctgccggaaatcgagcgctacatcaacggcaagctgccctgcgagcatccgccg
gaaggcatgctgtaa
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