Halomonas sp. NyZ770: LG409_13745
Help
Entry
LG409_13745 CDS
T10914
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hany Halomonas sp. NyZ770
Pathway
hany03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hany00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LG409_13745
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hany03019
]
LG409_13745
03009 Ribosome biogenesis [BR:
hany03009
]
LG409_13745
Enzymes [BR:
hany01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LG409_13745
Messenger RNA biogenesis [BR:
hany03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LG409_13745
Ribosome biogenesis [BR:
hany03009
]
Prokaryotic type
rRNA helicases
LG409_13745
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_dimer
CMS1
AAA_30
Motif
Other DBs
NCBI-ProteinID:
UDM06435
LinkDB
All DBs
Position
complement(2958064..2959776)
Genome browser
AA seq
570 aa
AA seq
DB search
MTSISVTSPSFGDLALLPAVLSAVEAQGYETPSPIQAQTIPALLEGRDMLGQAQTGTGKT
AAFALPLLSRLDMQRREPQVLVLAPTRELAQQVAVSFSKYGQNLQGLEVATLCGGQEYRE
QLGALKRGAQVVVGTPGRIIDHLDRGSLKLDGLSALVLDEADEMLRMGFIDDVKRVVADT
PKDAQRVFFSATLPSEIERIVNRYLVNPVKVAIESRTTTGENIEQRLVRVDGGAKLEALA
RILEVEPVDAAIVFVRTRAACTTLVEQLTARGVNAAGLSGDLDQSLRERTITRLKRGKVD
VLIATDVAARGLDVPRITHVVNYDLPQDAEAYTHRIGRTGRAGRSGIAITFAGFREGRKV
GWMEQATGQKMTEMPLPDEAAIRAHRDEVFHHRVVAALTKGAEEQRALVERLVEEGHDAV
ELACAFAAMARADEAPIGRLQAPRKERAPREGAPGKPAGARRERSSAPSEGMTRYRVSVG
HKDGVKPGQLVGALANEGGIEGARIGRIDIRNAFSVVELPSGLPSTILAKMARARVAGRP
LEISEDRAPERAPRRRRDDGDAPVRRRERA
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atgacctcgatttctgtcacctcgccgagcttcggtgatctggctcttttgcctgccgtt
ctgtctgctgtagaagcgcagggctacgaaactccttcgcccatccaggcgcagaccatt
ccagcattgctggaaggccgcgatatgctgggtcaggcacaaacgggtaccggtaaaacg
gctgcctttgcactgccgctgctgtcgcgtctcgacatgcagcgtcgcgagccccaggta
ctggtgctggcgcctacccgcgaacttgctcagcaggttgcggtttcctttagcaagtat
ggtcaaaacctgcaggggctcgaagtggcgaccctgtgtggtggtcaagagtaccgtgag
cagctgggcgccttgaagcgcggcgctcaggtcgtggtcggtacgcccggtcgtatcatc
gaccacctggatcgcggcagcctgaagctggacggtttgtctgctctggtgctggacgaa
gccgacgaaatgctgcgcatgggctttatcgacgacgtaaaacgcgtggttgccgatacc
ccgaaagatgcccagcgtgtgttcttctcggccacgctgccgtctgaaatcgagcgcatc
gtcaatcgctatctggtcaacccggtcaaggtggcgatcgaatcgcgcaccacgacggga
gaaaacatcgaacagcgcctggtgcgtgtggacggtggggccaagctggaagcgctggcg
cgtattctggaagtggagccggtggatgcggccatcgtgttcgtacggacacgtgctgcc
tgtaccacgctggtagagcagctgacggcgcgcggtgtcaacgcggctggcctgtcgggt
gacctggaccagagcctgcgtgagcgcaccatcactcgcctgaagcgtggcaaggtcgat
gtcctgatcgcgaccgacgtcgccgctcgtggtctggacgttccgcgtatcacccacgtg
gtgaactacgatcttccccaggacgccgaagcctatacgcaccgtatcggtcgtactggc
cgtgcgggccgcagcggtatcgcgatcaccttcgcgggcttccgtgaaggccgcaaggta
ggctggatggagcaggcaacgggtcagaaaatgaccgaaatgccgctgcctgacgaagcc
gctatccgtgcgcaccgtgatgaagtattccaccatcgcgtcgtggcagccctgaccaag
ggtgccgaagagcagcgcgcgctggtcgagcgtctggtggaagaaggtcacgacgccgtc
gagctggcatgtgcctttgctgccatggctcgtgctgacgaagcgccgattggccgtctg
caagcaccgcgcaaagagcgtgctccgcgtgagggtgcccccggcaaacctgctggtgct
cgtcgcgagcgctccagtgcgcccagcgaaggcatgacccgctaccgtgtatcggtaggc
cataaagatggcgtcaagcctggccagttggttggcgcgttggccaatgaaggcggtatc
gaaggtgcccgtatcggccgtatcgatattcgcaacgccttctcggtggtcgagctgccc
agcggcctgccgtctaccattctggccaagatggcacgtgcccgtgtggccggtcgcccg
ctggaaatcagcgaagaccgtgcgcccgagcgtgcaccgcgccgtcgtcgtgacgatggc
gatgcgccggttcgccgtcgcgaacgtgcgtaa
DBGET
integrated database retrieval system
