Halomonas sp. NyZ770: LG409_15550
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Entry
LG409_15550 CDS
T10914
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
hany Halomonas sp. NyZ770
Pathway
hany03030
DNA replication
hany03430
Mismatch repair
hany03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hany00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LG409_15550 (dnaE)
03430 Mismatch repair
LG409_15550 (dnaE)
03440 Homologous recombination
LG409_15550 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hany03032
]
LG409_15550 (dnaE)
03400 DNA repair and recombination proteins [BR:
hany03400
]
LG409_15550 (dnaE)
Enzymes [BR:
hany01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LG409_15550 (dnaE)
DNA replication proteins [BR:
hany03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LG409_15550 (dnaE)
DNA repair and recombination proteins [BR:
hany03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LG409_15550 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
HROB
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
UDM06770
LinkDB
All DBs
Position
complement(3367488..3370991)
Genome browser
AA seq
1167 aa
AA seq
DB search
MTVPFVHLRLHSEYSLVDGLVKLKPLVSTTAERGMPALALTDETNLFGLVKFYKAAQGAG
LKPIIGSDLWLANPHDEAHPYRITLLAMNQDGYRNLTELISKGWTHGQRQGRAILDKQWV
LAQSDGLIALSGGRDGDIGRHLLSEHEREARQLLEEWQQAFPDRFYLELVRTGRPLEEAC
VHASVKLAIETNTPVVATNDVRFLARDDYWAHETRVAIGEGKALDDPRRERRYTEEQYLK
SPEEMAALFADIPEALENSVMIAERCSVDVRLGEIFLPEFGIPEGMTQDEFFRKVSHDGL
TERLDFLFPAEEYPRDGDAFREIEQRYRDRLEFELNVIIQMGFPGYFLIVMDFIQWAKDN
GVPVGPGRGSGAGSLVAYAQKITDLDPIGYDLLFERFLNPERVSMPDFDVDFCMEKRDRV
IDYVADRYGRNAVSQIVTFGTMAAKAVVRDVARAQGKPYSLGDKLSKLIPFEVGMTLAKA
IEQEPALKEFIDNDEEAEEIWEMALKLEGTTRGTGKHAGGVVIAPTKLTDFSPLLCDEDG
AGLVVQFDKNDIEDAGLVKFDFLGLRTLTIIDWALEMVDKVRDAAGQGPLNIDAIPLDDG
KTFEMLKRAETTAVFQLESRGMKELIKRLLPDSLDDMIALVALFRPGPLQSGMVDDFINR
KHGRAEVSYPHPDYQHELLKPVLTPTYGIILYQEQVMQIAQVMAGYTLGQADMLRRAMGK
KKPEEMAKQRSGFMEGCAANGIDKDLAGNIFDLVEKFAGYGFNKSHSAAYALVSYQTAWL
KAHYPGPFMAAVMSTEMDNLDKVVPLIEECRHLKLTVTPPDVNVGGYKFTVDTEGRVVYG
LGAIRGVGEGPIGAIVEARNADGPFKDLFDFCRRIDPKRMNKRTLEALIRSGALDTLGPN
RAVLAAAMEDALKAAAQNHANQNLGMLDMFGDAFAAEEEAGDVYAEYRHAREWTDRERLS
GEKDTLGLYLTGHPIDEYERELKRFVSTRISDLKPSREPQRVAGLVVAMRTMKSKRGDTM
AFITLDDRTGRIEASLFGELFDQLRGQIESDQVIIVEGEVSSDDFSGGLRLRGKDVTPMV
TARVRYGQAVELALDAGQINGRLVDSLRDSLSPYRDSEGLPVRLQYRHPDAVGWLELADE
WKVAPSDDLLLALRDVQGQVGVQLRYR
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atgacggttccgttcgttcatcttcgtttgcacagtgaatactccctggtcgatggtctg
gtcaagctcaagccgctggtcagtaccaccgctgaacgggggatgcccgcgctggcgctg
acggacgagaccaacctgtttggcctggtgaagttctacaaggcggcgcaaggagcgggg
ctcaagcccatcatcggcagcgacctgtggctggccaatcctcacgatgaagcgcacccg
taccgcattacgctgctggccatgaaccaggacggctatcgcaacctcaccgagctgatc
tccaaggggtggacccacgggcagcgccaggggcgggcgattctcgacaaacagtgggta
ctggctcagagcgacggactgattgcgctgtccggcggccgcgatggcgacattggccgt
catttgctgtcggaacacgagcgtgaagcgcgccaactgctggaggagtggcaacaggcc
ttccccgaccgtttctacctggagctggtgcgcacagggcggccgctggaggaagcctgc
gtgcatgccagcgtcaagctggccatcgagaccaacacgccggtggtggccaccaacgac
gtacgctttctggcccgcgacgattactgggcccatgaaacccgtgtcgccatcggggaa
ggcaaggcgctggacgatccgcgccgcgagcgccgctataccgaagagcagtacctgaaa
agcccggaagagatggcggccctgtttgccgatattccggaagcgctggaaaacagcgtg
atgattgccgagcgctgcagcgtggatgtgcgcctgggcgagatattcctgccggaattc
ggcatccccgagggcatgacccaggatgagttcttccgcaaggtctcccatgacggcctg
accgagcggctcgactttctgtttcccgccgaggagtacccccgcgacggcgacgccttc
cgtgagatcgagcagcgctaccgtgaccgcctggagttcgagctcaacgtcatcatccag
atggggtttccaggctacttcctgatcgtcatggacttcatccagtgggccaaggacaac
ggcgtgcccgttggccctgggcggggttccggcgcgggctcgctggtggcctacgcccag
aagatcaccgacctggacccgattggctacgacctgcttttcgagcgcttcctcaacccc
gagcgtgtctcgatgcccgacttcgacgtcgacttctgcatggagaagcgcgaccgggtc
atcgactatgttgccgaccgctatggccgcaacgcggtctcccagatcgtcactttcggc
accatggccgccaaggccgtggtgcgtgacgtggcccgtgcccagggcaagccgtactcg
ctgggggacaagctctccaagctgatcccgttcgaagtgggcatgacgctggccaaggcc
atcgagcaggagcccgccctcaaggagttcatcgacaacgatgaagaggcggaagagatc
tgggaaatggccctgaagctggagggcaccacccggggcaccggcaagcacgcggggggc
gtggtcatcgcgcccaccaagctgaccgatttttcgccgctgctgtgtgacgaggatggc
gccgggctggtggttcagttcgacaagaacgacattgaagacgctgggctggtgaagttc
gacttcctggggctgcggaccctcaccatcatcgactgggcgctggagatggtggacaag
gtgcgcgatgcagcaggccagggcccgctcaatatcgatgccatcccgctggacgacggc
aagaccttcgaaatgctcaagcgggcagagaccacggcggtgttccagctcgaatcccgc
ggcatgaaggagctgatcaagcggctgctgcccgactccctggacgacatgatcgccctg
gtggccctgttccgtccgggcccgctgcagtcgggcatggtggatgacttcatcaaccgt
aagcatggccgggcggaagtatcttatccacacccggattaccagcatgagctgttgaaa
ccggtactgacgccgacctacggcatcatcctgtaccaggaacaggtcatgcagattgcc
caggtgatggcgggctacaccctgggccaggcggacatgctgcgccgagccatgggcaag
aaaaagcccgaagagatggccaagcagcgctccggtttcatggaaggctgtgccgccaac
ggtatcgacaaggacctggcgggcaacatcttcgacctggtggagaaattcgccggttat
ggcttcaacaagtcgcactcggcggcctacgcactggtttcttaccaaactgcatggctg
aaggcccactacccaggcccgttcatggcggcggtcatgtccaccgagatggacaacctg
gacaaggtggtgccgctgatcgaagagtgccgccacctgaagctcaccgtgacaccaccg
gatgtcaacgtgggtggctacaagttcaccgtggatacggaaggccgcgtagtgtacggc
ctgggggccatccggggcgtgggcgaaggcccgattggtgccatcgtcgaggcgcgcaat
gccgatggccccttcaaggacctgttcgatttctgccgccgtatcgaccccaagcgcatg
aacaagcgcaccctcgaagcgctgattcgctccggggcgctggacaccctgggccccaac
cgtgccgtgctggctgccgccatggaagacgccctcaaggccgccgcccagaaccatgcc
aaccagaatctgggcatgctggacatgttcggggacgcgtttgctgccgaagaagaggcc
ggggatgtgtacgccgagtaccgccatgcccgggagtggaccgaccgcgagcgtctttca
ggggaaaaagacaccctggggctttaccttaccggccaccccatcgatgagtacgagcgc
gagctcaagcgcttcgtctctacgcgcatcagcgacctcaagccgtcccgcgagccccag
cgggtggcagggctggtagtggccatgcgcaccatgaagtccaagcgtggcgacaccatg
gccttcatcacgctggacgaccgcaccgggcgtatcgaagcgtcgctgttcggtgagctg
ttcgatcagttgcgcggtcagatcgagtcggatcaggtcatcatcgtcgagggagaagtc
tccagcgatgacttctcgggtgggctgcgcctacgcggcaaggacgtcaccccgatggtc
accgcccgcgtgcgctatggccaggccgtggaactggcgctggatgcagggcagatcaat
ggccgcctggtggatagcctgcgcgacagcctctcgccttaccgggatagcgaaggcctg
ccggtgaggttgcagtatcgccatccggacgccgtagggtggctggagctggccgatgag
tggaaagtggcccccagcgacgacctgctgctggccctgcgtgacgttcagggccaggtg
ggggttcagctacgctatcgctga
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