Halothece sp. PCC 7418: PCC7418_0262
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Entry
PCC7418_0262 CDS
T02379
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
hao
Halothece sp. PCC 7418
Brite
KEGG Orthology (KO) [BR:
hao00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hao03016
]
PCC7418_0262
Enzymes [BR:
hao01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
PCC7418_0262
Transfer RNA biogenesis [BR:
hao03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
PCC7418_0262
Prokaryotic type
tRNA splicing ligases
PCC7418_0262
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AFZ42499
LinkDB
All DBs
Position
299889..301340
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AA seq
483 aa
AA seq
DB search
MIRKQDLHRLDHYLWEIPTSFHPEMKIPVWIFADEELMEAALGDLSITQAVNVACLPSLV
GHIAVMPDVHQGYGMPIGGVMASQLPDGIISPGAVGYDINCGVRVLASQIHYQSAIPYLH
DLAKTLYHNCPSGVGRGGSLPLSPKEFSEVCREGARWDLAQGYAIPEDLERTEEFGCLEG
ADPTQASKRAKQRGKDQLGTLGAGNHFLEVDVVEDVFDPEAAAVMGLEKGCLAVQIHCGS
RGFGHQICTDYVQDFQKAVLNYGIQLPDRELVCAPLNSPEGEGYLTAMKAAANFAFANRQ
ALAYHARRSFEAVFGAQADYPPLRQVYDIAHNMAKIETHVIGGEEMTVCVHRKGATRAFG
PGFVGLPPEYRPFGQPVLVPGSMGTESWILLGTPTNEKLSFGSSCHGAGRVMSRRQAKRT
IRGDRLREQLEKDGIAICAGSMPGLAEEAPQAYKNVNRVVETVSQAGIARKVARLHPVAV
IKG
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgattagaaaacaagatttgcatcgtctcgatcactatctgtgggaaattccaacatca
ttccatcccgagatgaagataccagtttggatttttgccgatgaagaattaatggaagca
gccctcggtgatttatccattacccaagcggttaatgttgcttgtttaccgagtttagtg
gggcatatcgcggtcatgcctgatgttcaccaaggatacggaatgcccattggtggggtg
atggcttcccaactcccagacggaattatttcgccaggagccgtgggttatgatatcaac
tgcggggtcagggttttagcgtctcaaattcactaccagagtgcgattccctatttacat
gatttagcaaaaacgttatatcacaattgtcccagtggggttggtcgaggcggtagttta
cccttatcacccaaagaatttagtgaagtttgtcgagaaggggcgcgttgggatctcgct
caaggctacgcaattccagaagatttagagcgaacagaagaatttggctgcttagaaggg
gcagatccgacacaagccagtaaacgggcaaaacaacgcggaaaagaccagttaggaact
ctcggtgcagggaatcattttctggaagtggatgtagttgaggacgtttttgatcccgaa
gcagcagcagtcatgggtttagaaaaaggctgtctggcagtacaaattcactgtggttct
cgcggatttggacatcaaatttgtactgattatgtgcaagattttcaaaaggcagtcctc
aattatggaattcaattaccagatcgagaattggtttgtgcgccgttgaattctccagaa
ggggaaggctatttaactgccatgaaagcagcagctaattttgcttttgccaaccgtcaa
gccctggcttatcatgcccgccgtagttttgaagccgtctttggtgctcaagcagactat
ccgcccctgcgtcaagtttatgatattgcccataacatggcaaaaattgaaactcatgtc
attggtggggaagaaatgacggtttgtgtccatcgtaaaggggcaacgcgagcgtttggt
ccgggatttgtcggattaccccctgaatatcgcccctttgggcaaccggtgcttgttccg
ggttctatgggaacggaaagttggattcttttaggcactccaaccaatgaaaaactttct
tttggatcaagctgtcatggggcggggcgcgtcatgagtcgtcgtcaggcaaaacgcacg
attcgcggggatcgcttgcgggaacaactcgaaaaagacggtattgccatctgtgccggt
tccatgcctggactggcggaagaagccccacaagcctataaaaatgtgaatcgagtggtg
gaaacggtcagtcaagcgggaattgctcggaaagtggctcggttacatcccgttgctgtg
attaaaggttag
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