Halothece sp. PCC 7418: PCC7418_1664
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Entry
PCC7418_1664 CDS
T02379
Name
(GenBank) DNA polymerase III, epsilon subunit
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
hao
Halothece sp. PCC 7418
Pathway
hao03420
Nucleotide excision repair
hao03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hao00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PCC7418_1664
03430 Mismatch repair
PCC7418_1664
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hao03400
]
PCC7418_1664
Enzymes [BR:
hao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PCC7418_1664
DNA repair and recombination proteins [BR:
hao03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PCC7418_1664
MMR (mismatch excision repair)
Other MMR factors
PCC7418_1664
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD_C
UvrD-helicase
RNase_T
AAA_19
UvrD_C_2
Viral_helicase1
AAA_12
Rv2179c-like
AAA_30
DEDDh_C
DEAD
ResIII
AAA_11
RNase_H_2
Motif
Other DBs
NCBI-ProteinID:
AFZ43843
UniProt:
K9YCL2
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All DBs
Position
1825794..1828238
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AA seq
814 aa
AA seq
DB search
MSQYPPNSEQKNIINHIEGAILVLAPVGTGKTRVLSDRVVKAIQSGIPAEKILCLTFTNR
AAKEMKERLAQSCPNEVREITIKTFHGLCASMLRIEARKIGLPADFVVYDDADCIGLIKD
IFNVSKDKDAQKIFFKLAECKTKTNHFHASPQQRFLSLGENESELASQYQIILQERHSLD
FADLIFNVRLMLNLYPDIRQKWEQRFDLIQVDEVQDTHLSEYEIVHCLASHRCNLAMIGD
LDQTIYEWRGSEPEQVIGQFKQDFQPQEYSLVLNYRATKTLLNAASAFADCFTKRHTQIT
PAESCEVGDSIEFYTTEKENQEAEWIGKQIQNLANHDPNFDYNRIAVLTRTHKRIYLIAN
VLEKLNLPCVTVEQYQFFMRQEVKDALAYLRLIINPFDTASMRRILLRPRRGIGNATVNH
IINEGQDYGFHLTDMIFKETFVDGDPFSHLLTAYYSGTIVIFDVETTGLSVSEDEVIEVA
GVKLVEGEVTDEFHYYIANEVSVGDSQNVHHHSDDFLAENGQPAITVLRGFLDFIQGALL
VGHNVGFDIKMITAHARRIGLNPPLFQWADTWSLSNRFIESDSYRLGVLAKNLNLPVSPT
HQAIDDARTTVELLLYLIPLIEKHSDERRALVYRYGDNFETLAQQVENWREKSQERRSAN
LLEQILEESGLYAYYQQEEKKRLDNLQRLVQVFEEKDNLGFHPETALRNILEEIALAKDL
DKVSQDNNQILIITVHQAKGLEFDTVFLAGLCENEFPSYYSIRDQTIEEEKHLFYVAMTR
AKKRLFLSTYRQNAKGYHNQPSRFLREVTEYVNQ
NT seq
2445 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcaatatccgcctaattctgaacagaaaaatatcattaatcatatcgagggagcg
attttagttcttgcgccagtgggaacaggaaaaacccgcgttttatcagatagagtcgtt
aaagctatacagtctggtattcctgctgagaaaattctttgtttgacttttaccaaccgt
gctgctaaagaaatgaaagaacgattagcacaaagttgtcctaatgaagttcgtgagatt
actattaaaacctttcatggtttatgtgcttctatgctaagaattgaagcacgcaagatt
ggtttacccgccgattttgttgtctatgatgatgctgactgtattggactaattaaagat
atttttaatgtctcaaaagataaagatgcacaaaaaatattttttaagttagcagagtgt
aaaactaaaactaatcactttcacgcttctcctcaacagcgatttctctctctaggagaa
aatgaatctgaattagcaagtcaatatcaaataattctacaagaacgtcattctctagac
tttgcggatttaatatttaatgtgcgcttaatgttgaatctctatccagacattcgacaa
aaatgggaacaacgttttgacttgatccaagtcgatgaagttcaagatactcatctatct
gaatatgagattgttcactgtttagcctctcatcgttgtaatctagccatgattggtgac
ttagaccaaaccatttatgaatggcgagggtctgaacctgaacaagtgattggtcaattt
aagcaagattttcagccccaagaatattctttagttttaaactatcgtgctactaaaact
ttactaaatgctgcgtctgcttttgctgattgtttcactaaaagacatacacaaattaca
ccagcagaaagttgtgaagtcggtgattcaattgaattttatacaacagaaaaagaaaat
caggaagccgaatggattggaaaacaaattcaaaacctagctaatcatgatcccaatttc
gattataatcgtatcgctgtactaactcgcactcataagcgaatttatctgattgctaat
gtcttagaaaaattaaatcttccttgtgtgacagttgaacagtatcaattttttatgcgt
caagaagtgaaagatgctttagcttatttacgcttgattattaatccttttgataccgct
tcaatgcgccgaattttattacgtcctcgtcgaggaattggtaacgcaaccgttaatcat
attattaatgaaggacaggattatgggtttcatttaaccgatatgatatttaaggaaact
tttgttgatggtgatccgtttagtcatttactaaccgcttattattcaggaacaattgtt
atttttgatgtggaaacaactggactttctgttagtgaagatgaagtgattgaagtggct
ggggttaaattagtggaaggtgaagtaacagacgaatttcattattatattgctaacgaa
gtctctgtgggagactctcaaaatgtacatcatcatagcgatgattttttagcagaaaat
ggtcagccagcgattacagttcttcgagggtttctggattttatacagggcgctttattg
gttgggcataatgtgggatttgatattaaaatgattacagcccatgctcgtagaattggc
ttaaatccccctttgtttcaatgggcggatacgtggagtttatctaaccgttttatcgag
tcagatagttaccgtctgggagttttagctaagaatttaaatctacctgtatcgccaact
catcaggcgattgatgacgctagaacaaccgttgaactcctattatatttaattcctttg
attgaaaaacattctgatgagcgtcgcgctttggtatatcggtatggtgataattttgaa
actctggcgcagcaagttgaaaattggagagagaagagtcaagagaggcgatctgctaat
ttattagagcaaattttagaggaatctggtttatatgcttattatcagcaagaagagaaa
aaacgtttagataatttacaaaggctggttcaggtatttgaagaaaaagataacctcggg
ttccatccagaaacagctttacggaatattcttgaagaaattgcattagcgaaagactta
gataaagtttctcaagataacaaccaaattttaattatcacagttcatcaagcgaagggg
ttagagtttgatactgtttttttagcagggttatgtgagaatgagtttcctagctactac
agtatccgcgatcagacaatagaagaagaaaaacacctattttatgtggcgatgacgaga
gcaaaaaaacgcttatttctctcaacttatcgtcaaaatgcgaaaggctatcacaaccaa
cccagtcgatttttgcgggaagtcactgaatatgttaatcagtaa
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