Glaesserella parasuis SH0165: HAPS_0012
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Entry
HAPS_0012 CDS
T00825
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ, superfamily II
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
hap
Glaesserella parasuis SH0165
Pathway
hap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HAPS_0012 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hap03019
]
HAPS_0012 (recQ)
03400 DNA repair and recombination proteins [BR:
hap03400
]
HAPS_0012 (recQ)
Enzymes [BR:
hap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HAPS_0012 (recQ)
Messenger RNA biogenesis [BR:
hap03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HAPS_0012 (recQ)
DNA repair and recombination proteins [BR:
hap03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HAPS_0012 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
Cas3-like_C_2
Helicase_Sgs1
ResIII
HEM4
Hanta_Gn-B
Motif
Other DBs
NCBI-ProteinID:
ACL31717
UniProt:
B8F315
LinkDB
All DBs
Position
complement(17103..18932)
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AA seq
609 aa
AA seq
DB search
MSVTPLAKAETVLHNVFGYQSFRQGQSEVIEAILSGKDCLVIMTTGGGKSLCYQVPALCF
EGITLVISPLISLMKDQVDQLLTNGVEAGYINSTQTIEEQQAVEQKAISGQLKLLYLSPE
KVMTSNFFQFISLCKISLIAVDEAHCVSQWGHDFRPEYTLLGGLRKTFPNIPLVALTATA
DPTTRFDIIHHLKLEDPHTYLGSFDRPNIRYTVQEKFKPVDQLIKFISSQQGKSGIVYCN
SRKKVEELTEKLSSHRFSVMGYHAGMTMQQRETVQNAFQRDNIQIVVATVAFGMGINKSN
VRFVVHFDLPRSIEAYYQETGRAGRDDLPAEAVLFYDPADYGWLHKVLLEKPESEQRQIE
QHKLQAIGAFAESQTCRRLVLLNYFGETRQVACQNCDICLDPPKKYDGLVDAQKVMSVIY
RTGQRFGLHHIIAVLRGLNQQKIREYQHDTLSVYGIGKDKSQEYWISVTRQLIHLGFIRQ
NIVNHSALQLTEQARPILRGETALALASPRLSFSATTYMQKQQTSKRYDKDLFARLRFLR
KQIADKENIPPYVVFNDATLQEMAEFMPTTADEMLSINGVGERKLERFGEAFLRLIREHL
YHIESIVCD
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atgtcagttacaccgcttgccaaagctgaaacggttttacataacgttttcggctaccaa
tctttccgacaaggtcaatcagaagtgattgaagcgatcttgtcgggcaaagattgcttg
gtgattatgacaacagggggcggaaaatccctttgttatcaagtgccagccctctgtttt
gaaggcataactctcgtgatctcgcctttgatttcgctaatgaaggatcaggtagatcaa
ctgctcaccaatggtgttgaagctggctatatcaattccactcaaactattgaagaacag
caagcggttgaacaaaaagcgatttcgggacaactcaagctactttacctttcacccgaa
aaggtaatgacatcaaatttttttcaatttatctcattgtgcaaaattagcctgattgca
gtcgatgaagcccattgcgtatctcaatggggacacgattttcgccctgaatacaccttg
ttaggcggtttgcgaaaaactttcccaaatataccgcttgttgcgctgactgcaaccgca
gatccgacaacccgttttgatattattcatcatcttaagttagaagatccccatacttat
ttaggaagttttgatcgtcctaacattcgctatacggtgcaagaaaaatttaaacctgtg
gatcaactgatcaaatttatcagtagtcagcaagggaaaagtgggattgtttattgtaat
agccgtaagaaagttgaagaactcacggaaaaactttcttctcaccgtttttctgtaatg
ggctatcacgcaggaatgacgatgcaacaacgggaaaccgttcaaaatgcgtttcaacga
gataatattcaaattgtcgttgctactgttgcctttggaatggggatcaacaaatccaat
gtgcgttttgttgtgcattttgatctgccaagaagcattgaagcctattatcaagaaaca
gggcgagcagggcgagatgatcttcctgccgaagcggtgttattttacgatcctgcggat
tatggttggctacacaaggtattactagaaaaaccagaaagtgaacaacgtcaaattgag
caacataaattgcaagccattggggcttttgccgaatcacaaacttgccgtcgccttgtg
ttactcaactattttggtgaaacacgccaagttgcttgtcaaaattgtgacatttgcctt
gatccaccgaaaaagtatgatggcttagttgatgcccaaaaagtgatgtccgttatttac
cgcacaggacaacgcttcggcttacatcatattattgcagttcttcggggcttaaatcag
caaaaaatccgtgaatatcaacacgacactctatctgtctatgggattggcaaggataaa
tctcaagaatattggattagcgtaactcgccagctcattcatcttggctttattcgccaa
aacattgttaatcattctgccctacaactcacagaacaagctcgccccattttacgcggt
gaaacagccttggcactggcttccccacgtttaagtttttcggcgacaacttatatgcag
aaacagcaaactagcaagcggtatgataaagatctttttgcccgtttacgctttttacgc
aaacagattgccgataaggaaaatatccctccttatgtggttttcaatgacgctacccta
caagaaatggcagaatttatgccaacgacggcagatgaaatgctttccattaatggggta
ggtgagagaaaactggagaggtttggagaggcgtttttaaggcttattagagagcattta
tatcatatagaaagtattgtttgtgattaa
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