Glaesserella parasuis SH0165: HAPS_0274
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Entry
HAPS_0274 CDS
T00825
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
hap
Glaesserella parasuis SH0165
Pathway
hap03410
Base excision repair
hap03430
Mismatch repair
hap03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hap00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HAPS_0274 (recJ)
03430 Mismatch repair
HAPS_0274 (recJ)
03440 Homologous recombination
HAPS_0274 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hap03400
]
HAPS_0274 (recJ)
DNA repair and recombination proteins [BR:
hap03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
HAPS_0274 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
HAPS_0274 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HAPS_0274 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Motif
Other DBs
NCBI-ProteinID:
ACL31962
UniProt:
B8F3R0
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All DBs
Position
300525..302147
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AA seq
540 aa
AA seq
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MDLSLKGLHHPKGLANMEQAVDLLLDSLTRQDRIVIVGDFDADGATSTALAILALRQFGF
QQVDYLIPDRFSQGYGLSLSVAEMVMAKGADFVLTVDNGISSFEGIALLKAQGIRVLVTD
HHLPADSLPNADAMVNPNLAACTFPSKSLAGVGVIFYVMMALRAKMRELCYFKEKEPNIA
ELLDLVALGTVADVVPLDHNNRILVNQGLNRIRSGHCRVGIQALAEVAKRDLYALQASDL
GFAIAPRLNAAGRLENMSLGVELLISDNLALARQFALELDSLNQTRKEFEQEMKAEALVL
CAKLPTLSQQNQAQGIVLYQPDWHQGVIGILASRIKDQFHRPVIAFAQESDDSEYLKGSA
RSIAGLHMRDLLERIDAKYDNLIVKFGGHAMAAGLTIHQDHLAQFQTVFDETVNEVAEPE
WLQGVIYTDGELLADEFNLATAELLKQAGPWGQHFPEPTFEGRFRILQQKLLAGKHLKMM
VENEYGTLFDAIWFNVDVKCYPDLSIKQATFVYKLDINEFRGGKNLQLLIEYLLEDDQFK
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
ttggatttatctctcaaaggtttacatcaccctaaagggcttgccaatatggaacaagcc
gtggatttactgttagacagtttaactcgacaagatcggattgtgattgtgggggatttt
gacgcagatggtgcaaccagtaccgctttggcgattttggcgctacggcagttcggtttt
cagcaggttgattatttaatccctgatcgcttttcacaaggctatggcttaagccttagt
gttgcggaaatggtcatggcaaaaggggcagattttgttttaacggtagataatggcatt
tcttcttttgaagggattgctttacttaaagctcaagggattcgggttcttgtaaccgat
caccatttacctgcagacagcctgccaaatgcagatgcaatggtaaacccaaatctggcc
gcttgtacttttccctcaaagtctttggctggtgtcggggtgattttctatgtgatgatg
gccctgcgagctaaaatgcgtgagctgtgctacttcaaagagaaagagcctaacattgca
gaattattagatcttgttgctttaggaacagttgcagatgtcgttccgcttgatcacaat
aatcgcattttggttaatcagggtttaaatcgtattcgttcagggcattgccgagtgggg
atccaagcattggcagaggtggctaaacgagatctctatgctttgcaagccagcgatcta
gggtttgccattgccccaagattgaatgcggctgggcgattagagaatatgtctttgggg
gtagagctgttgatttccgataatctcgcgttggctcgtcaatttgccctagagctggat
tcattaaatcagactcgtaaagaatttgagcaagagatgaaagcggaagccttagtcctt
tgtgctaagttgccaacgctctctcagcaaaatcaagcacaaggtatcgtgttatatcaa
cctgattggcatcaaggggtgattggcatcttggcttctcgcattaaagatcagtttcac
cgtcctgttattgcatttgctcaggaaagtgatgatagtgaatatttaaaaggatctgct
cgttctattgctgggctgcatatgcgagatttattagaacgtatcgatgctaaatatgat
aatttgattgtcaagtttggcggacacgcaatggcggccggtttgaccattcatcaagat
catttagctcaatttcaaactgtatttgacgaaaccgtgaacgaagttgcagaacctgaa
tggttacaaggtgtgatttatacagacggcgagttgttagccgatgaatttaatctagca
acggcagaactactcaaacaagcggggccttgggggcaacattttccagaaccgactttt
gaggggaggtttcgtatcttgcaacagaaacttttggctggaaaacatctgaaaatgatg
gtggaaaatgaatatggtacgctattcgatgcaatctggtttaatgttgatgtaaaatgc
tatcctgatttatctattaaacaggcaacatttgtttataaattggatattaatgaattt
aggggaggaaaaaacctccaactacttattgaatatttattagaagatgatcaattcaaa
taa
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