Glaesserella parasuis SH0165: HAPS_0474
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Entry
HAPS_0474 CDS
T00825
Symbol
deaD
Name
(GenBank) cold-shock DEAD box protein A-like protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hap
Glaesserella parasuis SH0165
Pathway
hap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HAPS_0474 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hap03019
]
HAPS_0474 (deaD)
03009 Ribosome biogenesis [BR:
hap03009
]
HAPS_0474 (deaD)
Enzymes [BR:
hap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HAPS_0474 (deaD)
Messenger RNA biogenesis [BR:
hap03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HAPS_0474 (deaD)
Ribosome biogenesis [BR:
hap03009
]
Prokaryotic type
rRNA helicases
HAPS_0474 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
DRTGG
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ACL32142
UniProt:
B8F490
LinkDB
All DBs
Position
complement(505873..507684)
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AA seq
603 aa
AA seq
DB search
MTETTLTFADLGLPQSILNSVNEMGFVTPSPIQQACIPHLLNGRDVLGMAQTGSGKTAAF
SLPLLAQIDPEQRHPQMLVMAPTRELAIQVADACEQFSKNMKGIRTVTIYGGQRYDIQIR
ALKNGAQVVVGTPGRILDHIRRGTLDLSMLKAIVLDEADEMLRMGFIEDVETVMAELPED
HQTALFSATMPEPIRRITKRFMKDPQEVKIQATQRSAPDIAQSYWLVNGFRKNDALLRFL
EVEEFDAAIIFTRTKTGTIDIAELCERNGYRAAALNGDMTQQAREQALEKLKSGRLDVIV
ATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLKNI
EHLIKKPIDEVPVPNHEILMEKRREKFKARISLQLEHHDLELYRELLEDLFTADQDHEEL
AAAMMMLLQEKQKLILPPDPEIRPSRAERGKGRENPRSAERRGGGREHRDNNGVAMDLYR
IELGREDGVEVRHIVGAIANEGDINSRYIGHIKLHDKYSTIELPQGMPKHLVQHFAQKAR
VLSKPMQMSFLGPVGSATNANPYEDKSGRGKGRGRNGRREERGFKDRKEGGFKEKRFNER
GRR
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atgactgaaacaactttaactttcgccgatttaggcttaccacaatctatccttaattct
gtaaatgaaatgggttttgtaaccccatcaccgatccagcaagcctgtatcccacacctt
ttaaatggtcgtgatgtgttaggtatggcacaaacaggaagtggtaaaacagcggcattc
tctttacctttattagcacaaatcgatccagaacagcgtcacccacaaatgttggtgatg
gcaccaacccgtgaattagcaatccaagtggctgatgcttgtgagcagttcagcaagaat
atgaaaggtattcgcacggtcacgatttatggtggtcagcgttatgatattcaaatccgt
gctttaaaaaatggtgcgcaagttgtggtaggaacgccagggcgtattcttgaccatatt
cgccgtggtaccttagatctttctatgctaaaagcgattgtgttagatgaagcagacgaa
atgttacgtatgggctttatcgaagatgtcgaaacggttatggcggaactgcctgaagat
caccaaacggcacttttctctgccacaatgccagagccaattcgccgtattaccaaacgt
tttatgaaagatccgcaagaagtcaaaattcaggcaacccaacgttctgcaccagatatt
gcacaaagttactggttagtgaacggcttccgtaaaaatgatgcgttattgcgtttctta
gaagtagaagagtttgatgctgcgattatctttactcgtaccaaaactggcaccattgat
attgcagaactctgtgagcgtaacggctaccgtgctgctgcattaaacggcgatatgacc
caacaagcacgtgaacaagcgttggaaaaacttaaatcaggtcgtttagatgtgattgtg
gcgacagatgttgccgcacgtggtattgatattgaacgcattagcttggtagtaaactac
gacattccacttgacgcagaatcttatgttcaccgtatcggtcgtacaggtcgtgctggt
cgttcaggtcgtgcattattatttgtagagccgcgtgaacgtcgtttattgaaaaacatt
gaacacttaatcaagaagccgattgatgaagtgccagtaccaaatcacgaaattttaatg
gaaaaacgtcgtgagaaatttaaagcacgcatttcattacaattagaacatcacgattta
gagctttatcgtgaattattagaagatctattcacggcagaccaagatcacgaagaatta
gctgcagcaatgatgatgttgttgcaagaaaaacaaaaacttattcttccgccagatcct
gaaattcgcccttctcgtgctgagcgtggcaaaggacgtgaaaatccacgttctgcggaa
cgtcgtggtggcggtcgtgagcatcgtgataacaacggcgttgcgatggatctctatcgt
atcgaacttggtcgtgaagatggtgttgaagtgcgtcacattgttggagcgattgccaac
gagggtgatattaacagccgttatatcggacatatcaagttacacgataaatactcaacc
attgaattaccacagggtatgccgaaacatttagtgcaacatttcgcacagaaagcacga
gtgttaagcaaaccaatgcaaatgtctttcttaggtcctgtgggcagtgcaaccaatgct
aacccttatgaagataagagcggacgtggtaaaggtcgtggcagaaatggtcgccgtgaa
gaacgtggctttaaagatcgcaaagaaggcggatttaaagaaaaacgttttaacgagcgt
ggtcgtcgataa
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