Glaesserella parasuis SH0165: HAPS_0476
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Entry
HAPS_0476 CDS
T00825
Symbol
pnp
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
hap
Glaesserella parasuis SH0165
Pathway
hap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HAPS_0476 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hap03019
]
HAPS_0476 (pnp)
03016 Transfer RNA biogenesis [BR:
hap03016
]
HAPS_0476 (pnp)
Enzymes [BR:
hap01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
HAPS_0476 (pnp)
Messenger RNA biogenesis [BR:
hap03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HAPS_0476 (pnp)
Transfer RNA biogenesis [BR:
hap03016
]
Prokaryotic type
tRNA degradation factors
HAPS_0476 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
S1_RRP5
KH_2
KH-I_KHDC4-BBP
KH_SLS1_2
aRib
S1_2
Motif
Other DBs
NCBI-ProteinID:
ACL32144
UniProt:
B8F492
LinkDB
All DBs
Position
complement(508956..511085)
Genome browser
AA seq
709 aa
AA seq
DB search
MTPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKEVNEGQDFFPLTV
DYQERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVN
PQISPDLVAMIGASAALSLSGVPFNGPIGAARVGFIDNQFVLNPTTSEQRLSRLDLVVAG
TDKAVLMVESEADILTEEQMLAAVVFGHEQQQVVIENIKEFVKEAGKPRWDWVAPEPNTD
LINKVKALAEARLGDAYRITEKQARYEQIDAIKADVIAQLTAEDETISSGKIVDIITALE
SQIVRSRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSALFTRGETQALAVATLGTERD
AQIIDELTGEKSDRFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVLAVMPTAEEF
PYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSDI
LGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMRIALNQAKGARMHILGVMEQAI
PAPRSEISDFAPRIHTMKIDPKKIKDVIGKGGATIRALTEETGTSIDIDDDGTVKIAATD
NNAAKRVMERIEEIVAEVEVNAIYKGKVTRVVDFGAFVSILGGKEGLVHISQITDARVER
VADYLSVGQDVQVKVVEIERQGRIRLTMKDLNGDATAREVVEEIQELAE
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atgactccaatcgttaaacaatttaaatacggtcagcataccgtaactttagaaacaggg
gctattgctcgtcaagcaacagcagcagtaatggcaagtatggacgacactaccgttttt
gttaccgttgtggcaaaaaaagaggtgaatgaaggccaagacttcttcccattaactgta
gattatcaagagcgtacttacgcagcaggccgcattccaggtggtttcttcaaacgtgaa
ggtcgtccatctgagggtgaaactttaattgctcgtttaatcgaccgcccggttcgccca
cttttccctgaaggtttcttcaacgaaattcaagtgattgcaacggtggtttctgtcaat
ccacaaatcagcccggatttagtggcgatgatcggtgcttcagctgcattatctttatcc
ggcgtgcctttcaacggcccaatcggtgcagcacgtgttggttttatcgataaccaattc
gttttaaacccaactacatcagaacagcgtttaagccgtttagatttagtggtagctggt
acagacaaagcggtattaatggttgaatctgaagcagatatcttaactgaagaacagatg
ttagccgcagtggtgtttggtcacgaacagcaacaagtggtgattgaaaacatcaaagaa
tttgtgaaagaagcgggcaaaccacgttgggattgggttgctccagagccaaatacagat
ttaatcaataaagttaaagcattagcagaagctcgtctgggcgatgcttaccgtattact
gaaaaacaagcacgttatgaacaaattgacgcaatcaaagctgatgttatcgctcaatta
accgcagaagatgaaaccatttcaagcggcaagattgtagatattattaccgcattagaa
agccaaatcgtgcgtagccgtattatcgcaggcgaaccgcgtattgacggtcgtacagtg
gataccgtgcgtgcattagatatttgcactggcgttttaccacgtactcacggttcagca
ttgtttacccgtggtgaaacacaggcgttagcagttgcgacattaggtacagagcgtgat
gcacaaatcattgacgaattaacaggcgaaaaatcagatcgcttcttattccactacaac
ttccctccatattcagtaggtgaaacaggtcgtatcggttcgccgaaacgtcgtgaaatc
ggtcacggtcgtttagcgaaacgtggtgtgttagcagtaatgccaacggcagaagaattc
ccgtatgttgtgcgtgtggtatctgaaattaccgagtcaaacggttcttcatcaatggct
tctgtatgtggtgcttctcttgcgttaatggacgctggtgtgccaatcaaagcggctgtt
gctggtatcgcaatgggcttagtgaaagaagaagagaaatttgtggtactttcagacatt
ttaggtgatgaagaccacttaggcgatatggactttaaagtagcgggtacccgtgaaggt
gtaactgcattacaaatggacatcaaaattgaagggatcacccctgaaattatgcgtatc
gcattaaatcaagcgaaaggcgcacgtatgcacattttaggtgtgatggaacaagcgatc
cctgcaccacgttcagaaatttctgacttcgcacctcgtattcatacaatgaagatcgat
ccgaagaaaatcaaagatgtgatcggtaaaggtggtgcgacaattcgtgcattaaccgaa
gaaactggcacatcaatcgacattgatgatgacggaacagtgaaaattgcggcaacagac
aacaacgccgcgaaacgtgtgatggaacgtatcgaagagatcgttgcagaagttgaagtc
aatgcgatctacaaaggtaaagtaacccgtgtagtagatttcggtgcattcgtgtctatc
cttggtggtaaagaaggtttagtgcatatttctcaaatcactgacgctcgtgtagaacgt
gttgcggattacctatctgttggtcaagacgttcaggtgaaagtggtagaaatcgagcgt
caaggccgtatccgcttaacaatgaaagatctgaatggtgatgcaactgctagggaagtt
gttgaagaaattcaagaattagcagaataa
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