Glaesserella parasuis SH0165: HAPS_0516
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Entry
HAPS_0516 CDS
T00825
Symbol
rnb
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
hap
Glaesserella parasuis SH0165
Brite
KEGG Orthology (KO) [BR:
hap00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hap03016
]
HAPS_0516 (rnb)
Enzymes [BR:
hap01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HAPS_0516 (rnb)
Transfer RNA biogenesis [BR:
hap03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
HAPS_0516 (rnb)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
ACL32177
UniProt:
B8F4C5
LinkDB
All DBs
Position
559124..561103
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AA seq
659 aa
AA seq
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MFQNNPLLAQLKQQIEASKEYVEGVVKTSDKSYGFLECEKNSYFIPPAEMKKVMHGDKVK
AVVKRDGDKEQVEIDSLLEPMLERFIAQVRFNKDGKLQLAVDHPSINNFIPANTQKKVTE
PLENGDWVVAQLKTHPLRDDRFFFAQVTQFICKADDNFAPWWVTLARHEQPREPVANEKS
YELQDQVEREDLTHLYFTTIDSASTKDMDDALYVEPISENGTQTGWRLVVAIADPTAYIP
EQSAIEKAARQRCFTNYLPGFNIPMLPRELSDDLCSLVPNEKRPALVGYIETDLSGNVVG
EARFVSAWVQSKARLVYDEVSDYLEKVENHWTPDCAETAQQIDWLHQFTLARIDWRSKNA
LLFKEQGDYSFELAEDGAVKAIHIDYRRIANQMIEEAMIIANICAAQFLDKYAHTGVFNT
HSGFDSKNLEPARKFLLDTLANDENRESLSERYSPERLSTLEGYCEMRRDIEQFPENFLE
MRLRRYLTFAEFKATSAPHLGLGISHYATWTSPIRKYGDMVNHRLIKQVLSNQTAKPVEE
TVLARLQEARKQNRMVERDIADWLYARYLEPMVEQNVEFDGEIQDVSRGGLRVKVIENGA
SVFVPFSTLHNNKEEMLFSPEEIALYIKGEKAYQIGQAVKVKLKEVRVETRSVVGDVLI
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atgttccaaaataaccccctattagctcaattaaaacaacagattgaagcaagcaaagaa
tatgttgaaggcgttgtaaaaacgtcagataaaagttatggctttttagaatgtgagaaa
aatagctatttcattccccctgcggaaatgaaaaaagtgatgcacggcgacaaagtcaaa
gccgttgtaaagcgtgacggagataaagagcaagttgaaattgactcgttattagagcca
atgttagaacgttttattgctcaagtgcgttttaacaaagacggaaaattgcaattagcc
gttgatcacccaagtatcaataactttattccagccaatacgcagaaaaaagtcacagaa
ccccttgaaaatggcgactgggtagtggcacagttgaaaacacaccctctgcgtgatgat
cgctttttctttgctcaagtcactcaatttatctgcaaagcggacgataatttcgctccg
tggtgggtaacattagctcgccacgagcaacctcgtgaacccgttgcgaatgagaaaagc
tatgaattacaggatcaagtcgagcgagaagatctaactcacctctattttactaccatt
gacagtgccagcactaaagatatggacgatgcgttatatgttgagccgattagcgaaaac
ggtacgcaaacaggctggcgtttagtagttgcgattgccgatccgaccgcttacattcct
gagcaatccgcgattgaaaaagcggctcgccaacgctgtttcaccaactacctccctggt
tttaacattccgatgttgccacgagagctgtctgatgatctttgctctctcgtgccgaat
gaaaaacgcccagcattagtcggctatattgagacagatttaagcggtaatgtggtaggt
gaagctcgctttgtgtcagcttgggttcaatctaaagctcgtttggtctatgacgaagtg
tctgattatcttgaaaaagtcgaaaatcactggacaccagactgtgcagaaaccgcacaa
caaatcgactggttgcatcaatttacccttgctcgtatcgactggcgtagcaaaaatgca
ctgctatttaaagaacaaggcgattacagctttgagttagctgaagacggtgcggtcaaa
gcaattcacattgactatcgccgtatcgctaaccaaatgatcgaagaggcaatgattatt
gccaacatctgtgccgcacagtttttagataaatatgcacacacaggcgtatttaatacc
cactcaggttttgatagcaaaaatctagagccagctcgtaaattcttactagataccctt
gccaatgatgaaaatcgtgagagtttatccgaacgctactcccctgagcgtttaagtacc
cttgaaggctattgcgaaatgcgtcgtgatattgagcaattccctgaaaatttcttagaa
atgcgcttacgccgctatttaacttttgctgaatttaaagcaacatcagctccgcattta
ggtttaggcatcagccattatgcgacttggacatcgccaattcgtaaatatggcgatatg
gtcaatcatcgtttgatcaaacaagtgttatccaatcaaacggcaaaacctgtcgaagaa
accgttttagctcgcttacaggaagctcgtaagcaaaatcgtatggttgaacgtgatatt
gccgactggctctatgctcgttaccttgaacccatggtggaacaaaacgtagaatttgac
ggcgaaattcaagatgtttctcgtggtggcttgcgtgttaaagtcattgagaatggagct
tcggtttttgttccattctcaactctgcataataacaaagaagaaatgttatttagccca
gaagagattgcactctacatcaaaggcgagaaggcttaccaaatcgggcaagcggtgaaa
gtgaaacttaaagaagttcgtgtagaaacaagatcggttgtgggtgacgttttaatctaa
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