Glaesserella parasuis SH0165: HAPS_0827
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Entry
HAPS_0827 CDS
T00825
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
hap
Glaesserella parasuis SH0165
Pathway
hap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HAPS_0827 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hap03021
]
HAPS_0827 (rho)
03019 Messenger RNA biogenesis [BR:
hap03019
]
HAPS_0827 (rho)
Transcription machinery [BR:
hap03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
HAPS_0827 (rho)
Messenger RNA biogenesis [BR:
hap03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HAPS_0827 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
S1CSD-TOTE-2
OB_RNB
AAA_22
AAA_25
AAA
Motif
Other DBs
NCBI-ProteinID:
ACL32460
UniProt:
B8F558
LinkDB
All DBs
Position
complement(828462..829661)
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AA seq
399 aa
AA seq
DB search
MGLENLARLRKQDIIFAILKQHAKSGEDIFGQGVLEILPDGFGFLRSADSSYLAGPDDIY
VSPSQIRRFNLQTGDKIEGKIRPPKEGERYFALLKVDLVNDDKPEVSRSKILFENLTPLH
ANSRLRMERGNGSKEDLTARILDLASPIGKGQRGLIVAPPKAGKTVLLQNIAQSITHNYP
ECELIVLLIDERPEEVTEMQRSVKGEVIASTFDEPATRHVQVAEMVIEKAKRLVEHKKDV
VILLDSITRLARAYNTVTPASGKILSGGVDANALHRPKRFFGAARNVEEGGSLTIIATAL
VDTGSKMDEVIFEEFKGTGNMELHLSRKIAERRVFPAIDFNRSGTRKEDLLTSPDELQKM
WILRKILNPMGEVEAMEFLIDKLMVAKTNDEFFEIMKRS
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atggggctagaaaacttagctcgcttacgcaaacaagatattatctttgccattttgaaa
caacacgcaaaaagtggtgaagacattttcggtcaaggcgtgttagaaatcttacctgat
ggttttggtttcctccgttctgccgatagttcttaccttgcaggccctgatgatatctat
gtttccccaagtcaaatccgccgtttcaatcttcaaactggtgacaaaatcgaaggtaaa
atccgcccaccaaaagaaggcgaacgttactttgcattgctaaaagtcgatttagtcaat
gatgataaacctgaagtttctcgtagcaaaattctctttgaaaacttaacgccactgcac
gctaactcacgtttgcgtatggaacgtggtaatggttcaaaagaagatttaaccgctcgt
atcttagatttagcttcaccaatcggtaaaggtcagcgtggtttgatcgttgcaccacca
aaagcaggtaaaaccgttttacttcaaaacattgctcaaagcattacccataactatcct
gagtgcgaattaattgttttattaattgatgaacgcccggaagaagtaactgaaatgcaa
cgttctgtgaaaggcgaagtaattgcttcaacctttgatgaacctgcaactcgccacgtt
caagttgccgaaatggtaattgaaaaagcgaaacgtttagtcgaacataaaaaagatgtg
gttattttattagactctatcacacgtttagcacgagcttacaacacagtaacccctgcg
tctggtaaaattctttctggtggtgtggacgctaacgctttacaccgcccaaaacgtttc
tttggtgctgctcgtaacgtagaagaaggcggtagcttaaccattattgcaacggcactt
gtggatacaggttcaaaaatggacgaagttatctttgaagagttcaaaggaacaggtaat
atggaattacacctttctcgcaaaattgcagaacgccgtgtattcccagcgattgacttt
aaccgttcaggcacgcgtaaagaagatctactcacaagcccagatgaattacaaaaaatg
tggattttacgcaaaatccttaacccaatgggtgaagtggaagcaatggagttccttatt
gataaattgatggtcgcaaaaaccaacgatgagttttttgagattatgaaaagatcttaa
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