Glaesserella parasuis SH0165: HAPS_1592
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Entry
HAPS_1592 CDS
T00825
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
hap
Glaesserella parasuis SH0165
Pathway
hap03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hap00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HAPS_1592 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hap03021
]
HAPS_1592 (rpoB)
03400 DNA repair and recombination proteins [BR:
hap03400
]
HAPS_1592 (rpoB)
Enzymes [BR:
hap01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HAPS_1592 (rpoB)
Transcription machinery [BR:
hap03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HAPS_1592 (rpoB)
DNA repair and recombination proteins [BR:
hap03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HAPS_1592 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
SPG4
Motif
Other DBs
NCBI-ProteinID:
ACL33143
UniProt:
B8F741
LinkDB
All DBs
Position
1570461..1574489
Genome browser
AA seq
1342 aa
AA seq
DB search
MAYSYSEKKRIRKSFGKRSQVLNVPYLLTIQLDSFDKFIQRDPEGLQGLEAAFRSVFPIV
SSNGATELQYVSYELGEPVFDVRECQIRGTTYAAPLRVKLRLVTFDREAAAGTVKDIKEQ
NVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHASGKVLYNARIIPYR
GSWLDFEFDPKDNLYARIDRRRKLPATIILRALGYTTEEILNMFFETATFHIEDNRLLMT
LVPERLRGETAAFDIEANGKIYVESGRRITARHIRALEKDNITQIQVPTEYIVGRVTARD
YVDLSTGEIVCPANSEIGLETLAALAQAGYNEIEVLFTNDLDYGPYISETLRIDPTYDRL
SALVEIYRMMRPGEPPTKEAAEALFDNMFFSTDRYDLSAVGRMKFNRSLDIPEGVGTGIL
SNDDIIGVMKKLIEIRNGRGEVDDIDHLGNRRIRSVGEMAENQFRIGLVRVERAVRERLS
LGDLDGVTPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGSGGLTR
ERAGFEVRDVHTTHYGRLCPIETPEGPNIGLINSLSVYARTNNYGFLETPFRKVVNGQVT
EEIEYLSAIEEGAYVIAQANSNLDENFRFTDTYVTCRGEHGESGLYRPEEIHYMDVSTQQ
VVSVAAALIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMEKPIALDSGVAVIAK
RGGTIQYVDASRIVVKVNEDETVAGEAGIDIYNLIKYTRSNQNTCINQIPCVKLGEPVGR
GEILADGPSTDLGELALGQNIRVAFMPWNGYNFEDSMLVSERVVQEDRFTTIHIQELSCV
ARDTKLGAEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLIPEE
KLLRAIFGEKASDVKDSSLRVPNGTSGTVIDVQVFTRDGVEKDKRAKDIEEIQLREAKKD
LTEELEILEAGLFTRVRNLLLEGGVAQATLDNLAREKWLEQTLDDEAKQNQLEQLAEQHE
ELRKEFERKLEIKRNKIIQGDDLAPGVLKVVKVYLAVKRQIQPGDKMAGRHGNKGVISKI
NPVEDMPYDENGQPVEIVLNPLGVPSRMNIGQILETHLGLAARGIGDQIDKMIKQQQEIA
KLREYIQKAYDLGHGAQSVDLSTFSDEEVMRLAQNLRKGLPLATPVFDGAHESEIKGLLE
LGGLPTSGQITLYDGRTGEKFERLVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQLGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGTHYMEPGIP
ESFNVITKEIRALAIDMELDEA
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggcatactcatattccgagaaaaagcgtattcgtaagagctttggcaaacgctcacaa
gttctgaacgtaccttatctattaacaattcagctcgattcttttgataaatttatccaa
agagatcctgaaggacttcaaggtttagaagcggcattccgttcagtgtttccgattgtg
agcagcaacggtgcaactgaattacaatacgtttcttacgaattaggcgaacccgtattt
gatgtgcgtgaatgccaaattcgtggtacaacctatgcagcgcctttacgcgtaaaactt
cgtcttgtgacctttgatcgcgaagcggcagcaggcacagtaaaagacatcaaagaacaa
aacgtctatatgggcgaaatcccattgatgaccgacaacggtactttcgtgatcaacggt
actgagcgtgttatcgtttctcagttacaccgtagtccaggcgtattcttcgattctgac
aaaggtaaaacccacgcttcaggtaaagtgctttataacgcacgcatcattccttaccgt
ggttcttggttagatttcgagttcgatccgaaagacaacctttatgcacgtatcgaccgt
cgccgtaaattaccggcaacaatcattctgcgtgcattaggctacaccaccgaagaaatc
ttaaatatgttcttcgaaactgcgactttccacattgaagacaacagattattgatgacc
ttagtacctgagcgtcttcgtggtgaaaccgcagctttcgacattgaagcaaacggcaaa
atctatgttgaaagtggtcgtcgtattaccgctcgtcacattcgtgcattagaaaaagac
aatattactcaaatccaagtgccgaccgagtatatcgtaggtcgtgtgacagcgagagat
tacgttgatctttcaacaggtgaaattgtttgcccagcaaacagcgagatcggtttagaa
acccttgcagcattagcacaagcaggttacaacgagatcgaagtattatttactaacgat
cttgattacggtccgtacatttctgaaaccttgcgtatcgatccaacttacgaccgttta
agtgcgttagtggaaatctatcgtatgatgcgtccaggtgagccaccaacaaaagaagcg
gctgaagcattatttgacaatatgttcttctcaaccgaccgctatgatctttctgcggta
ggtcgtatgaagttcaaccgttctttagatattcctgaaggcgtaggcacaggtatctta
agcaacgacgacatcattggtgtaatgaagaaattgatcgaaatccgtaacggtcgtggt
gaagtcgatgatattgaccacttaggtaaccgtcgtatccgctcagtgggcgagatggcg
gaaaaccaattccgtatcggtttagtgcgtgttgaacgtgcggtgcgtgagcgtctttca
ttaggcgatttagatggcgtgaccccacaagatttaatcaatgcgaaaccaatttctgcg
gcagtgaaagagttcttcggttcatcacaactttcgcaatttatggaccaaaacaacccg
ctttcagaagtcacccacaaacgtcgtatttcagcgttaggttcgggcggtttaactcgt
gaacgtgcaggctttgaagtgcgtgacgtacacaccactcactatggtcgcttatgtccg
attgaaaccccagagggtccaaacatcggtttgattaactcgctttctgtatatgcacgt
accaacaactacggcttcttagaaaccccattccgtaaagtcgtgaatggtcaagtgact
gaagagatcgaatacttatcagcgattgaagaaggtgcttacgttatcgcacaggcgaac
tcaaacttagatgagaacttccgctttaccgatacttatgtgacctgtcgtggtgaacac
ggtgagtctggtttatatcgcccagaagaaattcactatatggacgtttcaacgcaacaa
gtggtttctgtggcggcagcattaattccattccttgaacacgacgatgcgaaccgtgcg
ttaatgggtgcaaacatgcaacgtcaagcagttccaacattgcgtgcggacaaaccatta
gtcggtacaggtatggaaaaaccaatcgcccttgactctggtgttgcggtgattgcaaaa
cgtggtggtactatccagtacgttgatgcttctcgtatcgtagtaaaagtcaatgaagat
gaaaccgttgcaggtgaagcaggtattgatatttataacttaatcaaatatacccgatca
aaccaaaacacttgtatcaaccaaattccttgtgtgaaattaggtgagccggttggtcgt
ggtgaaatcttagctgatggtccttcaacagatttaggtgagttggcgttaggtcaaaat
atccgtgtggcatttatgccttggaacggctataacttcgaagactcaatgttagtctct
gagcgtgtagtacaagaagaccgctttactacaatccacattcaagagttatcttgtgtg
gctcgtgataccaaacttggtgcagaagagatcacggcagatattccaaacgtgggtgag
tcagcattaagcaaactggacgaatcaggtatcgtgtatatcggtgctgaagtgaaaggt
ggcgatattcttgtgggtaaagtgacaccaaaaggtgaaacccaattaatcccggaagaa
aaattactccgtgcgatcttcggtgaaaaagcatcagatgttaaagatagttcgcttcgt
gtaccaaacggcacatcaggtaccgttatcgacgttcaagtctttacccgtgatggcgta
gaaaaagacaaacgtgcgaaagacattgaagaaattcaattacgtgaagcgaaaaaagac
ttaaccgaagagttagagatcttagaagcaggcttgttcacccgtgttcgcaacctatta
cttgaaggtggcgttgcacaagcaacgttagataaccttgcacgtgaaaaatggttggaa
caaacccttgatgacgaagcaaaacaaaaccaacttgaacagcttgcagaacaacacgaa
gaactacgcaaagagtttgaacgtaaacttgagatcaaacgcaacaagatcattcaaggg
gacgatttagcaccgggcgtattaaaagtggtgaaagtgtatcttgcggtgaaacgtcaa
attcaacctggggataaaatggcaggtcgtcacggtaacaaaggggttatctcaaaaatt
aacccagttgaagatatgccgtatgacgaaaacggtcagccggttgagatcgtattaaac
ccattgggcgttccatctcgtatgaacatcggtcagatccttgaaactcacttaggtctg
gcagctcgtggtatcggtgaccaaatcgacaagatgatcaagcaacagcaagagattgcg
aagttacgcgaatatatccaaaaagcctatgacttaggtcacggagcgcaaagcgtggat
ttaagcaccttctctgatgaagaagtgatgcgtttagcacaaaacttacgcaaaggctta
ccgcttgcaacaccggtatttgacggtgcacacgaaagcgagatcaaaggcttattagaa
ttaggtggattaccgacatcaggtcaaattactttatatgatggacgtaccggtgagaaa
tttgagcgtctggtaaccgtaggttatatgtatatgctcaaattgaaccacttagttgat
gacaaaatgcacgctcgttcaacaggttcttatagtcttgttacccaacaaccactcggt
ggtaaagcacagctcggtggtcagcgtttcggtgagatggaggtatgggcattagaagca
tacggtgccgcttacaccttacaagaaatgctcacggtgaaatcggacgacgtaaacggt
cgtacgaagatgtacaaaaacatcgtggacggtacacactatatggaaccgggtattcca
gagtcattcaacgtaatcacgaaagaaatccgtgcattagcgattgatatggaattggat
gaagcgtaa
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integrated database retrieval system
