Glaesserella parasuis SH0165: HAPS_1650
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Entry
HAPS_1650 CDS
T00825
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
hap
Glaesserella parasuis SH0165
Brite
KEGG Orthology (KO) [BR:
hap00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hap03019
]
HAPS_1650 (hrpA)
Enzymes [BR:
hap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
HAPS_1650 (hrpA)
Messenger RNA biogenesis [BR:
hap03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
HAPS_1650 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
HA2_N
nSTAND3
T2SSE
ResIII
SLFN-g3_helicase
AAA_23
NACHT
ABC_tran
RsgA_GTPase
SRP54
AAA_30
AAA_25
PhoH
AAA_24
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
ACL33195
UniProt:
B8F793
LinkDB
All DBs
Position
1628082..1632020
Genome browser
AA seq
1312 aa
AA seq
DB search
MQKNHKNQPLTAEQKNLLNQLQDTTLIDARRLARRVRGLANIKNENAKQAIIAEIEVDLT
ACKSRYLTRKQQSEQLNIEYPDLPVSARRDEILKLIAEHQVVVIAGETGSGKTTQLPKMC
LELGRGVKGLIGHTQPRRIAARSVATRIAEELKSELGSTIGYKVRFNDQMSDNTLVKLMT
DGILLAEIQNDRYLNQYDTLIIDEAHERSLNNDFILGYLKQILAKRPDLKVIITSATIDV
ERFSKHFNNAPIIEVSGRTYPVEVRYRPIVEEDDQDQLQGILNAVDELQAEGRGDILIFM
NGEREIRDTAEALQKQELRHTEILPLYARLSAAEQQRIFNPSNLNRIILATNVAETSLTI
PNIKYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRISEGICIRLYSEEDF
NARPQFTDPEILRTNLASVILQMAALGLTDIASFPFVDAPDQRHIQDGIRLLEELGALGR
DTLRMSADARSASLQKLTNIGRQLAQLPIDPRLGRMVIEAAKNGSLHEVMMIVSALSIQD
PRERPQEKQQSSDDKHRRFADKESDFLAFVNLWHFIQEQQKELTKNQFRKLCQKDYLNYL
RVREWQDIYHQLRLAVREMGLPINSEPANYQQIHTALLSGLLSHIGLKDNEKMHYLGARN
AHFYLFPNSVLFKKQPKWVMAAELVETTKLWGRMVARIEPEWVEPLAKHLTKSSYSEPRW
AKSKGAVVADEKVSLYGIPIIASRPVMYGAIDPVVSREIFIRSALVEGEWHNNYKFFKEN
NRLIKEIEELEHKSRRRDILVDEQVLFEFYDQRIGTDVVSSKHFDSWWKKASQKDPELLN
FEKSFLMNDNANKVSELDFPNFWYQDSLKLKLSYQFEIGSQADGVTVHIPLPLLNQVDTH
GFDWHVPGLRQELIIALIKSLPKATRRSFVPAPNYAEAFLSRAEPFKKPLLESLSYELRR
MTGVLVEPEQWDLSQLPPHLRISFRVIDEKGKSLAESENLDELKFNLKDEVQNTLSNIAD
DGIEQSGVHLWNFADLPQFYEQKKQHFSVKAYPAIVDEKDAVGIKLFETEFEQAKAMQAG
LRRLLLLNVPSPIKYLHEKLPNKTKLGLYFAPFGKVLELIDDCIACAVDKLMEEFGGFVW
SEEKFNALHDYVRANLNDTTVEIAKQVEKNLTLAYEINKRLKGKLDFTMAFALSDIKAQI
DGLIYPDFVTKTGYKRLADLHRYLTAIDKRLDKLVVDSNADRSKMLRVEQVQNAYQQLLA
KLPKSKPISDEVLEIRYMIEELRVSLFAQQLGTKYPISDKRILNSIHQIIKF
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaaaaaccataaaaaccaaccgcttacagcagaacaaaaaaacttacttaaccaa
ctgcaagataccactttaattgatgctcgccgtttagccaggcgtgttcgtgggttggcg
aatatcaaaaatgaaaacgctaaacaagccatcattgcagaaattgaggtggatttgacc
gcttgtaaaagtcgctatctcacgcgtaaacaacaatcagaacaactgaatattgagtac
cctgatctgcctgtttccgctcgccgtgacgagatcttaaaactgattgccgaacatcaa
gtggtggtgattgctggggaaacagggtcgggtaaaactacacagttgccaaaaatgtgt
ttggaactagggcgtggggtgaaagggctaatcgggcatacgcaacctagacgtatcgca
gctcgctcggtggcgacacgcattgccgaagagctgaaatcggaactgggttcgactatt
ggatataaagtccgctttaacgatcagatgagcgataacactcttgtcaaattgatgacg
gacggtattctgcttgccgaaatccaaaacgaccgctatctcaatcaatacgatacgcta
attattgacgaagcccacgaacgttcgcttaacaatgattttattctcggctatctcaaa
caaattttagcaaaacgccctgatttgaaggtgatcatcacatcggcaaccattgatgtg
gaacgtttttctaaacatttcaacaacgcaccaattattgaagtatcaggcagaacttat
cctgtggaagtgcgttatcgcccgattgtggaagaagatgatcaagaccaactgcaaggc
attctcaatgcggtggacgaactgcaagcagaaggtcggggcgatattttgatttttatg
aacggcgagcgagaaattcgtgatactgccgaagccttgcagaagcaggaacttcgccat
acggaaattttaccgttatatgcccgtttatctgccgcagaacagcaacgcatttttaat
ccaagtaatctaaaccgcattattctcgcgactaacgtggcggaaacctcgctgactatc
ccaaatatcaaatatgtgattgatacaggaacggctcgcatttcccgttatagctatcgt
accaaagttcagcgtttgccgattgagccgatttctcaagcctccgccaaccagcgtaaa
gggcgttgcgggcgtatttcggaagggatatgtatccgcttgtattcggaagaggatttt
aacgcccgtccgcagtttaccgatcctgaaattttgcggacaaatctggcttcggttatc
ttgcagatggcggcgttgggtttgacggatattgcttcgtttccgtttgtagatgcgcca
gatcaacggcatattcaagatggtattcgtcttttagaagaattaggtgctttgggtagg
gacacactgcgtatgtccgcggacgcacgcagtgcgtccctacagaaattaacaaacatc
ggtcgccaactcgcccaactgcctatcgatccccgtctgggtcgtatggtgatcgaagcg
gctaaaaacggcagtttgcacgaagtgatgatgatcgtatcggcgttgtctattcaagat
cctcgtgagcgtccgcaggaaaaacagcaatcgtcagatgataaacatcgccgttttgcc
gacaaagagagcgattttttagcctttgtgaacctgtggcattttattcaagagcaacaa
aaggaactcaccaaaaatcagttccgcaagctctgccaaaaagattatctcaactatttg
cgagtgcgtgagtggcaggatatttatcatcagcttcgccttgcggtgcgtgaaatgggc
ttgccgattaacagtgagcctgcaaattatcagcaaattcacaccgctttattatcgggc
ttattgtctcatatcggcttgaaagataacgaaaaaatgcactatttaggggcgagaaat
gcccatttctacctgttccctaattctgtgcttttcaaaaaacagccgaaatgggtaatg
gcggcagaattggttgaaaccactaaattgtgggggcgaatggtggctcggattgagcct
gaatgggttgaaccgcttgccaaacacttaaccaaatccagttacagcgaaccacgttgg
gcgaaatcaaaaggggcggtggttgccgatgaaaaagtctcgctctacggtattccgatt
atcgccagccgtcctgtgatgtatggagcaatcgatcctgttgtcagccgtgaaattttt
atccgctcagcgttggtggaaggtgaatggcacaataattacaaatttttcaaagaaaat
aaccgcttgatcaaagagatcgaagagttggaacataaatctcgccgtcgagatatttta
gtggacgagcaagtgctgtttgaattttacgatcagcggatcggcacagatgtcgtttcc
agcaagcattttgacagctggtggaaaaaagcgtcacagaaagatcctgaactactgaac
tttgaaaaatcgttcttgatgaatgataatgcaaacaaagtcagcgaattagacttccca
aatttctggtatcaagattcgctcaagttgaagctgagctatcaatttgaaatcggctcg
caagcggacggcgtgacggtacatattccgttaccgttgctgaaccaagtggatacgcac
ggcttcgactggcacgttccggggctacgtcaagagctaatcattgccttgattaaatcg
ctaccgaaagccactcgccgtagttttgtacctgcaccaaactatgcagaagccttttta
tctcgtgcagagccgtttaaaaagccgttgttggaaagtttgagttatgaacttcgccga
atgacaggggttttggttgagcctgaacagtgggatttaagccaactgccaccgcatttg
cggatcagcttccgtgtgattgatgaaaaaggcaaaagccttgcggaaagtgaaaatctt
gatgaactgaaattcaatttgaaagacgaagtgcaaaatactctgtctaacattgccgat
gacggcattgagcaaagcggtgtgcatttgtggaattttgccgatttgccacaattttac
gagcagaaaaaacagcattttagcgtaaaagcctaccctgcgattgtcgatgaaaaagat
gccgttgggatcaagttgtttgaaacggaatttgagcaagccaaagcaatgcaagcaggc
ttacgccgattgttattgctaaacgtgccgtcgccgattaaatatctgcacgaaaaactg
ccgaataaaaccaaacttggtttatattttgctccgttcggcaaggtgctagaactgatt
gacgactgtatcgcctgtgcggtggataagttgatggaggagtttggtggctttgtgtgg
tcggaagaaaaatttaacgccctgcacgactacgttagggcgaatttaaacgacaccacg
gtcgaaattgctaaacaggttgagaaaaatcttacccttgcctatgaaatcaacaaacgt
ctaaaaggtaagttggatttcacgatggcatttgccctgtcagacattaaagcacaaatt
gacggtttgatttaccccgattttgtcaccaaaacgggctacaaacgccttgcagattta
caccgctatctcaccgctatcgacaagcggttagataagttggtggtggatagcaatgct
gaccgatccaaaatgttgcgagtggaacaggtgcaaaacgcctatcaacaactgttggcg
aaactgccaaaatccaaaccgatttccgatgaagtcttagaaattcgttatatgattgaa
gagttgcgtgtcagcctgtttgcccaacagcttggcaccaaatatccgatttcggataag
cggattttgaatagtattcaccaaataataaaattttga
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