Glaesserella parasuis SH0165: HAPS_2079
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Entry
HAPS_2079 CDS
T00825
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hap
Glaesserella parasuis SH0165
Pathway
hap03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hap00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HAPS_2079 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hap03400
]
HAPS_2079 (mfd)
Enzymes [BR:
hap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HAPS_2079 (mfd)
DNA repair and recombination proteins [BR:
hap03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HAPS_2079 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
AAA_30
SecA_DEAD
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ACL33536
UniProt:
B8F884
LinkDB
All DBs
Position
complement(2036567..2040220)
Genome browser
AA seq
1217 aa
AA seq
DB search
MLIFYIKNYYSYRALIILYDTEIIIIGKHFKIHSHNTSAPIPFNLLQLVPIASTILPFAI
FRINQTACMSFELQFRLPKADSTHQDHQTLGNLIGHSDTLAIVQTSQQFQGLTVVVTPDT
RTALRLEKSLPSFTKLPVQLFPDWETLPYDNFSPHQDIISARLSALFQLQQGQKQIFLLP
INTLLQKVCPPSYLANNVLLIKKGDRFSIEKLRLQLENAGYRAVEQVLEYGEYAVRGALL
DLYPMGANSPYRLDFFDDEIDTIRTFDVDNQRTIEQIDAINLLPAHEFPTDSNGIEYFRG
KFREQFGEIRREPEHIYQQVSKGILNAGIEYWQPLFFEQMASLFDYLPEQTLFITFADIQ
QKAEQFQQDTARRYESRRVDPMRPLLPPEQLWFNIDQINQQLKGYPRLTLTNEKVRSSAA
KQNANLEPLPDIAVQSNQKEPFASFLQFQQIFKGQILFSVETEGRRETLLELLAPLNIKP
KQVKQLAEINSQISLLISPLDQGFIIETSGQKLAIICETDLLGEKVQQSRRQEKSRKTVN
PDTLIRNLAELKIGQAVVHLENGVGRYGGLTTLDAGGIKAEYLVLHYANDAKLYVPVASL
HLISRYIGGTDENAPLHKLGSEAWAKTRQKAAEKIRDVAAELLDVYAKREAQKGFAFEYD
RDAFVQFSNTFPFEETEDQKTAINAVISDMCLPKAMDRLVCGDVGFGKTEVAMRATFLAA
MNHKQVAILAPTTLLAQQHFENFKDRFANYPINVEVLSRFKTAKAQKEILAKVADGKVDI
LVGTHKLLQEDVQFKDLGLLVIDEEHRFGVRQKERIKQLRANIDILTLTATPIPRTLNMA
LNGMRDLSIIASPPARRLSIKTFVRQSDDTVIKEAILREILRGGQVYYLHNDVATIENTA
QQLAELVPEARIVIGHGQMRERELERVMSDFYHQRFNLLVCSTIIETGIDVPTANTIIIE
RADKFGLAQLHQLRGRVGRSHHQAYAYMLTPPPKTLTKDAQQRLEAMSTIDNLGAGFVLA
THDLEIRGAGELLGSEQSGQIESLGFSLYMELLENAVKALQEGREPTLDEITQQQVDIEL
RVPALLPDDYLPDVNMRLSFYKRIASAESDEALKDLKIELIDRFGLLPEATKNLFQITQL
RHLAKGLQLKKVDAGINGGYLEFKPTATPDPMKFLKLIQADKNVYKFDGPLKFRFTKPME
RTEERLAFVAELIEKIR
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgttgattttttatataaagaactattattcatatcgtgctttaattattctctatgat
acagagatcatcattattggtaagcattttaagattcactcacataatacaagcgctcct
attcccttcaatcttttgcaactcgtccccatagcgagtacaatcctcccatttgcaata
tttcggataaatcaaaccgcttgtatgtcatttgaacttcaatttcgtctgccgaaagcg
gacagcacacatcaagatcatcaaactttaggtaacttaatcgggcattccgataccctt
gcgattgtgcagacaagccagcaatttcaaggcttgacggtggtggtgacacctgatact
cgcacagcgttgcggttggaaaaaagtttgccgagcttcacgaaactgcctgttcagctt
tttcctgactgggaaactttgccttacgacaatttttcgcctcatcaagacattatttcc
gcccgtttatctgcgttatttcagttacaacaagggcagaagcagatttttctgttgcca
atcaataccttattacaaaaagtctgcccaccgagttatttggcaaacaatgtactgttg
attaaaaaaggcgaccgtttttcgattgagaaattgcgtttacagctggaaaatgccggc
tatcgagcggtggaacaggtgctggaatatggcgaatatgcagtgcgtggggcgttgctc
gatctctatccgatgggggcgaattcgccttatcgtttggacttttttgatgatgaaatt
gacacgatccgtacctttgatgtggataatcaacgtaccattgagcagattgatgcaatc
aatttattgccagcccacgagttcccgacagatagcaacgggatcgagtattttcgtggc
aaattccgtgaacaatttggtgaaatccgccgtgaacctgagcatatttatcagcaggtg
agcaaaggcattttgaatgcagggattgaatactggcaaccgctcttttttgagcaaatg
gcgagcttgtttgactatctgcctgaacagacattgtttattacctttgccgatattcag
caaaaagccgagcaatttcaacaagatactgcaagacgctatgaaagtcgccgtgtcgat
ccgatgcgaccgctacttccacctgaacagctttggttcaatatcgatcagattaaccaa
cagctaaaaggctatccacgtttaactttaaccaacgagaaagttcgcagttcggcggct
aagcagaacgccaaccttgagccgttgcctgatattgcggtgcaatccaaccaaaaagaa
ccttttgcctcttttttacagtttcaacaaatattcaaggggcaaattctcttttcggtg
gaaacggaaggcagacgggaaaccttgcttgagctacttgcaccgctaaatatcaagcca
aagcaagtgaagcaactggctgagattaattcgcaaatttctttgttaatctcaccgctt
gatcaagggtttattattgaaacaagcggtcaaaaactggcgataatttgcgaaacggat
ctgttaggcgagaaagtacagcaaagtcgccgacaagagaaaagccgtaaaaccgttaat
cctgacaccttgatccgcaaccttgccgagctgaaaatcgggcaagcggtggtgcatttg
gaaaatggagtcgggcgttatggcggtttaactacccttgatgctggcggtattaaggcg
gaataccttgtgttgcattatgccaacgatgccaaactttatgtgcctgtggcttcgctc
catttaattagccgttatatcggtggcacagacgaaaatgccccgttacataaactggga
tcggaagcgtgggcgaaaacccgtcaaaaagcggcggagaaaattcgtgatgtggcggcg
gagttgcttgatgtctatgcgaaacgtgaagcacaaaaaggctttgcgttcgagtacgat
cgtgatgcgttcgtgcaatttagcaacacgttcccgtttgaagaaaccgaagatcagaaa
acggcgatcaatgcggtgattagcgatatgtgcttgccgaaagcaatggatcgccttgtg
tgtggcgatgtcggatttggtaaaaccgaagtggcaatgcgagcgaccttcttggcggca
atgaaccataaacaagtggcgatccttgctccgactaccttgttggcacagcaacatttt
gagaattttaaagatcgttttgctaattatccgatcaatgtcgaagtgctttcccgtttc
aaaaccgccaaagcgcagaaagagattttggcaaaagtggcggacggcaaggtcgatatt
ttggtcggcacacataaattattgcaagaagatgtgcagttcaaggatcttggcttactg
gtgattgacgaagaacaccgtttcggcgtgcgtcaaaaagagcgaattaagcaactacga
gccaacattgatattctcaccctcacagcaacgccaattccaagaacgctcaatatggcg
ttgaacggaatgcgagatctatcgattatcgccagtccgccggctcgccgtttgtcgatc
aaaacctttgtgcgacaaagcgatgatacggtaatcaaagaagcgattttgcgtgaaatt
ctgcgtggcggacaagtctattatctgcataacgatgtagcgaccattgaaaatactgct
caacagcttgccgaactcgtaccagaagctcgtattgtgatcggacacgggcagatgcga
gagcgtgagttggaacgggtaatgtccgatttctaccatcaacgctttaatctgttggtt
tgctcaaccattattgaaacagggattgacgtgccgaccgccaataccattattattgag
cgagcggataaatttggcttggcacagctacaccaactgcgtgggcgtgtcggacgttcg
caccaccaagcctatgcctatatgctaaccccaccgccaaaaacgctaaccaaagatgct
caacaacgattagaagcgatgagtactatcgataaccttggagcaggctttgtgctggcg
acccacgatcttgaaattcgtggagcgggtgaactgctggggagcgaacagagcggacag
attgagagcttaggtttctcactctatatggaactgcttgaaaatgcggtcaaagccttg
caagaagggcgtgaaccaactttagacgaaattacccaacaacaagtggatattgaatta
cgcgtgcctgcgttactgcctgatgattatctgcctgatgtgaatatgcgtttgtcgttc
tataaacggattgctagcgcagagagtgatgaagccttaaaagatctgaaaattgagctg
attgaccgcttcggtttactgccggaagccacgaaaaatctattccaaattactcagtta
cgccatttagcaaaagggttacagttgaaaaaagtcgatgcagggatcaacggcggttat
cttgagttcaaaccaacagcaacgcctgatccgatgaagttcttaaaactgatccaagcg
gataaaaatgtctataaatttgacggcccgttgaaattccgctttaccaagccaatggaa
cggacggaagaacgcttggcgtttgtggcggagttgattgagaaaatacgttaa
DBGET
integrated database retrieval system
