Haloplanus rubicundus CBA1112: DU484_14135
Help
Entry
DU484_14135 CDS
T05557
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
haq
Haloplanus rubicundus CBA1112
Brite
KEGG Orthology (KO) [BR:
haq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
haq03016
]
DU484_14135
Enzymes [BR:
haq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
DU484_14135
Transfer RNA biogenesis [BR:
haq03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
DU484_14135
Prokaryotic type
tRNA splicing ligases
DU484_14135
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
VESA1_N
Motif
Other DBs
NCBI-ProteinID:
AXG10892
UniProt:
A0A345EFC0
LinkDB
All DBs
Position
2556984..2558444
Genome browser
AA seq
486 aa
AA seq
DB search
MTTREFDGIRLERVREFVWEMPREGDMRVPARVLASEALLDEIGEDKTLQQLRNATHLPG
ITGHAICMPDGHQGYGFPVGGVGATDVEEGCISPGSVGYDINCGVRMMKTNITYADVQGH
EEELVNALFANVPSGLGGGGIVESGIDTVEAVLSRGVDWALEEGWAVEADLTHCEDEGYR
PDADPSAVSQKAKDRGKNQLGSLGSGNHFLEVQRVTDVYRDDVADAYGLEPDQIVVLIHC
GSRGLGHQTCTDYLRKIEKRHGDLLAELPDKELAAAPAGSELAEEYYGAMCACINFAWVN
RQLIMHRVRQVFERVFDRSWESMEMHLLYDVAHNIAKKEVHTVQGEERELYVHRKGATRA
FPAGHPEVPAAYRDVGQPIIIPGSMGAGSYVLRGGEASMELTFGSTAHGAGRLMSRTQAK
QEFWGETVQDELKEQNQVYVKAQSGATVAEEAPGVYKDVDEVVRVSDALGIGDKVARTYP
VCNIKG
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgaccacacgcgagttcgacggcatccggctcgaacgcgttcgggagttcgtctgggag
atgccccgcgagggcgacatgcgcgtccccgcccgagtactggcgagcgaggcgctgctc
gacgaaatcggcgaggacaagacgctccaacagttgcgaaacgcgacgcatctgccgggg
atcaccggccacgccatctgcatgcccgacggccaccagggctacggcttccccgtcggc
ggcgtgggggcgacggacgtagaggagggctgtatctcgccgggttcggtcgggtacgac
attaattgcggcgtgagaatgatgaaaacaaatatcacctacgccgacgtgcagggccac
gaggaggaactcgtgaacgccctgttcgcgaacgtcccctccggcctcgggggcggcggc
atcgtcgaaagcgggatcgacaccgtcgaggccgtcctctcccgcggcgtcgactgggcg
ctggaggaggggtgggccgtcgaggccgacctgacccactgcgaggacgagggctaccgc
ccggacgccgatcccagcgcggtgtcacagaaggcgaaggaccgggggaagaatcagctc
ggcagcctcggcagcggcaaccacttcctcgaagtccagcgggtgacggacgtctaccgc
gacgacgtggccgacgcctacggcctcgaacccgaccagatcgtcgtcctcatccactgt
gggagccgggggctgggccaccagacctgtaccgactacctgcggaaaatcgagaagcgc
cacggcgacctgctggccgaactgcccgacaaggaactcgcggcggcgccggcgggctcc
gaactcgccgaggagtactacggcgcgatgtgtgcctgtatcaacttcgcgtgggtgaac
cgccaactgatcatgcaccgcgtccggcaggtgttcgagcgcgtcttcgaccgctcgtgg
gagtcgatggagatgcatctgctgtacgacgtggcccacaacatcgccaagaaagaggtc
cacaccgtacagggagaagagcgcgaactgtacgtccaccgcaagggggcgacgcgggcg
ttcccggcgggacatcccgaggtgcccgcggcctatcgcgacgtgggacaaccgatcatc
atccccggaagtatgggtgcggggagctacgtcctccgtggcggcgaggcgtcgatggag
cttaccttcggctccaccgcccacggcgccggccggctgatgagccggacgcaggccaaa
caggagttctggggcgagacggtgcaggacgaactcaaggagcaaaatcaggtgtacgtc
aaggcccagagcggcgcgacggtggccgaggaggcccccggcgtctacaaggacgtcgac
gaggtggtgcgcgtctccgacgccctcggcatcggcgacaaggtggcacggacgtatccg
gtctgtaacatcaagggttag
DBGET
integrated database retrieval system
