Herminiimonas arsenicoxydans: HEAR1079
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Entry
HEAR1079 CDS
T00490
Symbol
hrpA
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
har
Herminiimonas arsenicoxydans
Brite
KEGG Orthology (KO) [BR:
har00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
har03019
]
HEAR1079 (hrpA)
Enzymes [BR:
har01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
HEAR1079 (hrpA)
Messenger RNA biogenesis [BR:
har03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
HEAR1079 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_19
AAA_22
T2SSE
nSTAND3
NACHT
TsaE
DUF1484
Motif
Other DBs
NCBI-ProteinID:
CAL61258
UniProt:
A4G421
LinkDB
All DBs
Position
1092891..1096907
Genome browser
AA seq
1338 aa
AA seq
DB search
MSAPESTPKTTSATSSRPARKTPTAAVSPPLRNPLPVITFPEELPVSGKRDDIARAIQAH
QVVIVSGETGSGKTTQLPKICLELGRGLSGLIGHTQPRRIAASSTAKRIAQEIGSPLGEH
VGFKVRFNDTLTKGAWIKLMTDGILLAETQTDPLLRQYDTIIIDEAHERSLNIDFLLGYL
KQLLPKRPDLKVIITSATIDADRFARHFGSNGKLAPVIEVSGRMYPVEVRYRPVEAFDKN
AANPNPNATSDAGQARRSALAARERGQRDLMDAVVDAVDELARIGSGDVLVFLPGEREIR
DAAEALRKHHPPHVEILPLFARLSAQEQERVFKISNARRIVLATNVAETSLTVPGIRYVV
DAGLARVKRYSYRNKVEQLQIEPIAQSAANQRAGRCGRVAAGVCIRLYDEQDYLLRPKFT
EPEILRSSLASVILRMKSLHLADVETFPFIEPPLGRAIADGYQLLQELGAVDDENRLTKL
GRELARLPLDPRVGRMILAAKDNVCLMEVLIIAAALSVQDPRDRPMEAQAAADNAHKKFV
DEKSEFQSYLKIWKWFEDAIAHKKSNRLLQEECRTSFLSQLRLREWRDVHSQLLTIVREQ
GWRLNEAPATYEQLHTALLTGLLGNIGFKSEEEQHYIGARAIKFHIWPGSSLIKKAGKWI
MAAELVDTTRLYARCIAQIQPEWLERVAGHLLKKSYGEPRWEKRTAQVSAYERATLYGLV
VYSQRRIQYGLINPADAREIFIRDALVGGDFDTRAPFFAHNNKLIREIENLEHKSRRLDV
LVDDELIAAFYDKIIPADIHNGISFEKWHKEATAKEPKLLYLNRDDLMRHEAAGVTTELF
PKMMNVAGVEMLLSYHFEPGTPRDGVTLTVPLYALNQVSADRCEWLVPGMLKEKVHLLIK
SLPQKLRRHCVPLPDYAAGFCDRAQTAHAFGKGSLLDAVIADVREQTGIATKTTDYKLET
LSSHQFMNFKIIDEHGRQLEMGRNLGTLRSEFGGQARESFQRIAEQTAMPLAAGLLGQST
GVGKASAIAVKAQASTPAAATQSGKATQVAGKAASATTHQNLTSWTFGELPELLEIQQGR
QTLIGFPALVDKSTHCDLEVFDDPAEAARVHRIGLRRLLALQLKEQLKYLEKNIPGLQQM
GMQFMALGSQEELREQIINAGLERACLLEPLPKNAEEFNARKDEGKSRLGLLVNEIARLL
GLILSEYHGLPKKLQTVKAHAQAVTDIQSQLQGLVSKRFLAETGYSNLTHFPRYLKAINV
RIDKLRADPARDARAMSEWQQVAAPWQRALKERHGDPKMTEFRWLLEELRVSLYAQELRT
PMPVSAKRLQKVWETMQR
NT seq
4017 nt
NT seq
+upstream
nt +downstream
nt
atgtctgctccagaatccacccccaaaactacctcagccaccagtagccgtcctgcacgc
aagacgccgactgccgctgtgtcgccaccactgcgcaatccgctaccggtcattaccttt
cctgaagagttgccggtttccggcaagcgcgacgatatcgcgcgcgctattcaggctcat
caggtcgtcatcgtcagcggcgaaaccggctccggcaaaaccacgcagctgccgaaaatc
tgcctggaactcggtcgcggcctgagcggcctgatcggtcatacgcaaccgcgccggatt
gcggcctcatcgacggccaaaaggatcgcacaggaaatcggctcgccgctgggcgaacac
gtcggtttcaaggtgcgtttcaacgacacgctgaccaagggcgcgtggatcaagctgatg
acggacggcattctgctggcggaaacgcagaccgatcctttgttgcgccagtacgacacc
atcatcatcgatgaagcgcatgagcgcagcctgaacatcgacttcctgctcggttacctg
aagcagttgctgccgaagcgccccgatctgaaagtcatcatcacctcggcgaccatcgac
gccgatcgcttcgcgcgtcactttggcagcaatggaaaactggctccggtgatagaagtg
tccggccgcatgtacccggtcgaagtacgctatcgcccggtcgaggcttttgacaagaat
gcggcgaatcccaatccgaatgcgacctccgatgccggtcaggcgcgacgttcggcgctg
gcggccagagagcgcggtcagcgcgacctgatggatgccgtcgtcgatgccgtcgatgaa
ctggcgcgcatcggttccggcgatgtactggtcttcctgccgggcgagcgcgagattcgc
gatgccgccgaagcgctgcgcaagcatcatccgccgcatgtggaaattttgccgttgttc
gcgcgtctttctgcacaggagcaggaacgcgtattcaagatctcgaatgcgcgccgtatc
gtgctcgccaccaacgtcgcggaaacctcgctgaccgtgcccggcatacgttacgtcgtc
gatgccggtctggcgcgcgtcaagcgctacagctatcgcaacaaggtcgagcagttgcag
atcgagccgattgcgcaatcggcggcgaaccagcgcgccggccgttgcggccgtgtcgcc
gccggcgtctgtatccgtctgtacgacgagcaggattatctgctgcggccgaaattcacc
gagccggaaattctgcgttcgtcactggcgtcggtcattttgcggatgaaatctcttcat
ctcgccgatgtggaaacctttcccttcatcgagccgccgctgggccgtgcgattgccgac
ggttatcaattgctgcaggagctgggtgccgtcgatgatgaaaatcgcctcaccaaactt
ggccgcgaactggcgcgcctgccgctggatccgcgcgtgggccggatgattctcgccgca
aaagacaatgtctgcctgatggaagtcttgatcatcgccgcagccttgtcggtacaggat
ccgcgcgataggccgatggaagcgcaggcggccgccgacaacgcgcacaagaaattcgtc
gatgaaaaatcggaattccagagttatctgaaaatctggaaatggttcgaagacgcgatc
gcgcacaagaaatcgaatcgtctgttgcaggaagaatgccgcaccagcttcctgtcgcaa
ctgcgcctgcgtgaatggcgcgatgtgcattctcaattgctgaccatcgtgcgcgagcag
ggctggcgcttgaatgaagcgcccgcaacctacgagcaattgcatactgcgctgctgacc
ggcctgctcggtaatattggcttcaagtcggaagaagagcaacactacatcggcgcgcgc
gccatcaagttccatatctggccgggttcatcgctgatcaagaaggccggcaaatggatc
atggccgccgagctggtcgataccacccgtctttatgcgcgttgcattgcgcagattcag
ccggaatggctggaacgcgtcgccggtcacttgctgaaaaaatcgtatggtgagccgcgc
tgggaaaagcgcaccgcccaagtgtccgcctatgagcgcgcgaccttgtacgggctggtg
gtctacagccagcgccgcattcaatacggcttgatcaatccggccgatgcgcgcgaaata
ttcatacgtgacgccctggtcggtggcgacttcgacacgcgtgcgccgttttttgcgcac
aacaacaagctgatacgcgagatcgagaatctcgaacacaagtcgcgtcgcctggatgta
ttggttgacgacgaattgattgccgcgttttacgacaagatcatcccggccgatatccac
aacggcatcagcttcgaaaagtggcacaaggaagcgaccgccaaagaacccaagctgctg
tatctgaatcgtgatgatttgatgcggcatgaggcggctggcgtgacgaccgagctgttc
cctaagatgatgaatgtcgccggtgtcgagatgctgttgtcgtatcacttcgaacccggt
acgccgcgcgatggcgtgacgctgactgtgcctctatatgcattgaatcaggtttccgcc
gatcggtgcgagtggctggttcctgggatgctgaaggaaaaagtccatctgctgatcaag
tccttgccgcaaaaattgcgccgccattgcgtgccactgcctgattacgcagccggtttt
tgcgaccgtgcgcagactgcacatgctttcggcaaaggcagcttgctggatgcagtgata
gccgatgtgcgtgaacaaaccggcatcgctaccaagacgacagactacaagctggagacc
ttgtcctcgcatcagttcatgaacttcaagatcattgatgaacatggccgccagctggag
atggggcgcaatctgggcaccttgcgttcggaatttggcgggcaggcgagggaaagtttc
cagcgtattgcggaacagacggcgatgccgctggcagcaggtttgctgggccagtcgact
ggcgttggtaaagccagcgctatcgcagtcaaggcacaagcgtcgactccagccgctgca
acgcagtcaggtaaagctactcaggtcgcgggcaaagccgccagtgcgaccacacatcaa
aacctgactagctggacctttggcgaattgccggagctgctggaaatccagcagggcagg
caaacgctgatcggttttccggcactggtcgacaagagcacacattgcgatctggaagtc
tttgacgatccggcggaagctgcgcgcgtgcatcgtataggcttgcgtcgcctgctggcg
ttgcagttgaaagaacagctcaagtatctggaaaagaacatacccggcctgcagcagatg
ggcatgcagttcatggcgctcggttcgcaggaagagttgcgcgaacagatcatcaacgcc
ggactggagcgcgcctgcctgctggaaccgttgccgaagaatgcagaggaattcaatgcg
cgcaaggatgaagggaaatcgcgtctcggtttgctggtcaacgaaatcgcacgcctgctc
ggcctgatcctaagcgaatatcatggcttgccgaagaagctgcaaaccgtgaaggcacat
gcacaagccgtcactgacattcagtcgcagctgcaaggcttggtcagcaaacgcttcctt
gccgaaaccggctacagcaatctcacgcatttcccgcgttatctgaaggcgatcaacgtg
cgtatcgataaattgcgcgccgaccctgcgcgcgatgcacgtgcaatgagcgaatggcag
caggttgccgcaccgtggcaacgtgcgctgaaggagcgtcatggcgatccgaagatgaca
gagttccgctggctgctggaagaattgcgcgtgtcgctgtatgcacaggaattgcgtacg
cccatgccggtttccgccaaacggctgcaaaaggtatgggaaaccatgcagcgctga
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