Herminiimonas arsenicoxydans: HEAR1829
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Entry
HEAR1829 CDS
T00490
Symbol
pnp
Name
(GenBank) Polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) (PNPase)
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
har
Herminiimonas arsenicoxydans
Pathway
har03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
har00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HEAR1829 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
har03019
]
HEAR1829 (pnp)
03016 Transfer RNA biogenesis [BR:
har03016
]
HEAR1829 (pnp)
Enzymes [BR:
har01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
HEAR1829 (pnp)
Messenger RNA biogenesis [BR:
har03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HEAR1829 (pnp)
Transfer RNA biogenesis [BR:
har03016
]
Prokaryotic type
tRNA degradation factors
HEAR1829 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
KH_2
DUF5813
KhpA-B_KH
S1_2
PCB_OB
Motif
Other DBs
NCBI-ProteinID:
CAL61984
UniProt:
A4G647
LinkDB
All DBs
Position
complement(1841648..1843780)
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AA seq
710 aa
AA seq
DB search
MFNKVTKTFQYGQHTVTLETGEIARQASGAVLVSIEDTVVLATVVARKDAKPGQDFFPLT
VDYVEKTYAAGRIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGYLNEVQIIIHVMSV
NPEIDPDIAAMIGASAALSVSGIPFAGPLGAARVGYIDGQYILNPTATQLKTSQMDLVVA
GTEAAVLMVESEAQQLSEEVMLGAVVFGHDQMKAVIDAIHDLVRDGGKPEVQWAPPAKNE
ALIARVAHFAEEKLRAAYQTKDKQARTAKLKDAFAEVNAEVAAEATSVGGAAPDTSEVGN
ILFDLEAKIVRSQILDGEPRIDGRDTRTVRPITIRTGVLPRTHGSALFTRGETQALVIAT
LGTARDEQKIDALMGEYSDRFMLHYNMPPFATGETGRVGTPKRREIGHGRLAKRALIAAL
PAPEDFSYSVRLVSEITESNGSSSMASVCGGCLALMDAGVPMQAHVAGIAMGLIKDGGKF
AVLSDILGDEDHLGDMDFKVAGTANGITALQMDIKIQGITKEIMQVALAQAKEGRIHILG
EMEKAVPSGTTGELSDFAPRLITIKINPEKIRDVIGKGGAVIRALTEETGTQIDISDEGV
VTIASVDAAAGQEAKRRIEELTASVEVGKVYEGTVLKLLDFGAIVQVMPGKDGLLHISQI
ANERVNAVADYLKEGQQVRVKVLETDDRGRLKLSMKAALAEDNPEAAPQE
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
gtgtttaataaagtcactaaaactttccagtatggtcaacatacggtcacgcttgaaacc
ggcgaaatcgctcgtcaagcttccggtgccgtactcgtctcgatcgaagatacggtcgta
ctcgcaacggttgtcgctcgcaaggatgcaaagccaggtcaggatttcttcccgctgacc
gttgattatgtagaaaaaacctacgctgccggtcgtattccaggtggcttcttcaagcgt
gaaggccgtccttccgaaaaagaaacgctgacatcgcgtctgatcgatcgtccgattcgt
ccgctgttcccggaaggctatttgaacgaagtgcagatcatcattcacgtgatgtcggtc
aatcctgagattgatccggatatcgctgcaatgataggcgcatcggctgccttgtcggtg
tcgggcattccatttgcaggcccgctgggtgctgcgcgcgttggttatatcgacggtcaa
tacatattgaatccaactgctacccaactgaaaacatcgcaaatggatctggttgttgcc
ggtaccgaagctgccgtgttgatggttgagtcggaagcgcagcaattgtcggaagaagtc
atgctgggcgcggttgtgttcggccacgatcaaatgaaagcagtcatcgatgcgatccat
gatctggtacgtgacggcggcaagcctgaagtgcagtgggcgcctccagcaaagaatgaa
gccttgatcgcacgcgtagcgcactttgcagaagaaaaattgcgtgcagcgtatcaaacc
aaagacaagcaggcacgtactgccaagctgaaagatgcatttgcagaagtgaatgctgaa
gttgctgcagaagctacctcggtcggcggcgctgcgccggatacgtccgaagtcggcaac
atcctgttcgatctggaagcaaaaatcgttcgttcgcaaatccttgatggcgaaccgcgt
atcgatggtcgtgacacacgcaccgtgcgtcctatcacgatccgtaccggcgtcttgccg
cgtacccacggttcggcattgttcacccgtggcgaaacgcaggcattggtgatcgcaact
ttaggcaccgcacgtgacgaacaaaaaatcgatgcactgatgggcgagtactcggatcgc
ttcatgttgcactacaacatgcctccgtttgcaaccggtgaaaccggtcgtgtcggtaca
cccaagcgtcgcgaaatcggtcacggccgtttggcgaaacgcgcactgattgcagccttg
cctgcaccagaagactttagctactcggtgcgcctggtttcggaaattaccgaatccaac
ggttcatcgtccatggcttcggtctgcggcggctgcctggcactgatggatgctggcgtg
cctatgcaagcgcatgtggctggtatcgccatgggcctgatcaaggacggcggcaagttt
gcagtcttgagcgacatcctcggcgacgaagatcacctcggcgacatggactttaaagtg
gctggtactgcaaacggtattaccgctttgcaaatggacatcaaaatccagggcatcacc
aaggaaatcatgcaagtcgctttggcgcaagcgaaagaaggccgcatccatatcctcggt
gaaatggaaaaagcagtgcctagcggtaccactggtgaattgtccgacttcgcgccgcgt
ctgatcaccatcaagatcaatccggaaaaaatccgtgacgtgatcggcaagggcggcgca
gtgattcgcgcattgacggaagaaaccggtacccaaatcgacatcagcgatgaaggtgtt
gtcaccatcgcttccgtcgacgcagctgccggccaggaagccaaacgtcgcatcgaagaa
ctgaccgcttctgttgaagtcggcaaggtctacgaaggtaccgttctgaaattgctggat
ttcggtgcgattgttcaagtcatgccaggcaaagatggtttgttgcacatcagtcagatc
gccaacgaacgcgtcaatgcagttgccgattatttgaaagaaggccagcaagtacgcgtt
aaagtattggaaacagatgaccgcggtcgtttgaaattgtcgatgaaagcagcgctcgca
gaagataatcctgaagcggcgccgcaagagtaa
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