Herminiimonas arsenicoxydans: HEAR2089
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Entry
HEAR2089 CDS
T00490
Symbol
rne
Name
(GenBank) Ribonuclease E (RNase E)
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
har
Herminiimonas arsenicoxydans
Pathway
har03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
har00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HEAR2089 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
har03019
]
HEAR2089 (rne)
03009 Ribosome biogenesis [BR:
har03009
]
HEAR2089 (rne)
Enzymes [BR:
har01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
HEAR2089 (rne)
Messenger RNA biogenesis [BR:
har03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HEAR2089 (rne)
Ribosome biogenesis [BR:
har03009
]
Prokaryotic type
rRNA processing factors
HEAR2089 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TMEM106_N
Motif
Other DBs
NCBI-ProteinID:
CAL62230
UniProt:
A4G6U3
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All DBs
Position
2093929..2096850
Genome browser
AA seq
973 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETTGREQRKSNIYKGVITRIEPSLEACFVSY
GEDRHGFLPFKEVARTYFKEGVDVRNASIKDALREGQEIMVQVEKEERGNKGAALTSFVS
LAGRYLVLMPNNPRGGGVSRRVEGEDRQELRETMDKLDLPQGMSVIARTAGIGRNVDELQ
WDLNYLMQLWRAIEGAGQSGAGAFLIYQESSLVIRAIRDYFQPDIGEILIDTDDIYEQAQ
QFMSHVMPDMVHRVKRYRDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVSV
DVNSARATRGSDIETTAFHTNCEAAEEVARQLRLRDLGGLIVIDFIDMENSKNQREVETR
LKDALHYDRARVQMGKISRFGLMELSRQRLRPSLSEGSHVTCPRCNGTGHIRDTESSALQ
VLRIIQEEAMKENSASIHVQAPVDVAAFLLNEKRGEILKIETRHRVSVILIPNKHLETPH
YKLERIKHDDPRLEEVQASYAMTEQADTDISYDKRLKVEAKPRQEAMVKGITPDHAPVVE
RKPVEMATAAAPAEKGFFQKLMAFFSGSPEQPKAAPAQAVQEDKNQRNQRGERKDGGRNQ
RNRSRGGRGGRERGEEREETATKPAPAASETQNARPPRPPREPREPREPRDGNEGRRERT
PRPPREERKEVVAEDASLLPVDAVVATTAAARTTPPAAEANGNVAVVLDENGIPVEAVEG
EEQPRRRRRRGGRNRNRRDRDNTESGTENESNEDGVVALQDDSLQDEAAQTPATAHVSAT
EMASTVASTVRQETVAHVTEASIASEAPVSALTSAIAAPLIPQEVMPQAEPEVAAPVVAV
PAAPAPEPEPVVAAPAFVAVEAAPVVEAVPAIEPAPVAAVTPAPMPQPAPVIAPVPAPVA
TVSAAPAASTSKVDDLSEVLQSAGLVLASTDPEKLRAAQEEAAKFVPPPRVPRERKPLPP
QSTEPLVQMETKR
NT seq
2922 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgttatttaatgcaacgcaacaggaagaattgcgcgttgccattgtcgat
gggcaaaaactcatcgatatcgatattgaaacaaccggacgcgaacaacgcaagtccaat
atctacaagggtgttatcacccgcatcgaaccctcgctcgaagcctgcttcgtcagctac
ggtgaagatcgccacggctttctgccattcaaggaagtcgcacgcacttactttaaagaa
ggcgtcgatgtccgtaacgcttcgattaaagatgcgctgcgcgaaggccaggaaatcatg
gtccaggtcgaaaaggaagaacgcggcaataaaggcgctgcactgacttctttcgtttcg
ctggctggtcgttacctggtattgatgcctaacaatccacgcggtggcggtgtatcgcgt
cgcgtcgaaggtgaagatcgccaggaattgcgcgaaacaatggataaactggatttgccg
caaggcatgtccgtgattgcacgtaccgccggcatcggccgcaacgttgacgaattgcaa
tgggatttgaattacctgatgcaattgtggcgtgcgattgaaggcgcgggtcaatccggc
gctggcgcattcctgatctatcaggaatcatcactggtaattcgcgcaatccgcgattac
ttccagcccgatatcggcgaaattctgatcgacactgacgacatctacgaacaagcccag
cagttcatgagccacgtgatgccggacatggtgcatcgcgtcaaacgctatcgcgacgac
gtgccgctgttctcgcgcttccagatcgaacaccagatcgaaaccgcgtactcgcgcact
gttccgctgccatccggcggcgcgatcgtgatcgatcacaccgaagcgcttgtttcagtc
gacgtcaactcggcacgcgctactcgcggcagcgacatcgaaaccactgcattccatacc
aactgtgaagccgctgaagaagtagcccgccaattgcgcttgcgcgatctgggcggcctg
atcgtcatcgatttcatcgacatggagaattcgaaaaaccagcgcgaagtcgaaacgcgc
ctgaaagacgctctgcactatgaccgtgcccgcgtccagatgggcaagatctcgcgcttc
ggcctgatggaattgtcgcgtcagcgcctgcgtccatcgctgtccgaaggcagccatgtc
acctgccctcgttgcaacggcaccggccacatccgcgataccgaatcgtccgcattgcaa
gtcctgcgcatcatccaggaagaagcgatgaaagaaaattcggcatctatccacgtgcaa
gcgccggtcgatgtcgcagccttcctgctgaacgaaaagcgcggcgaaatcctgaagatc
gaaacgcgtcaccgcgtctccgtcatcctgatcccgaacaagcatctggaaaccccgcac
tacaagctggaacgcatcaagcacgacgatccacgtctggaagaagtacaagccagctac
gcgatgaccgagcaagcggataccgacatcagctacgacaagcgcctgaaagtagaggcc
aaaccacgccaggaagcaatggtcaaaggcattacgccggatcatgcacccgtcgttgaa
cgcaaaccggtagaaatggcaacagctgctgcgcctgccgaaaaaggtttcttccagaaa
ctcatggccttcttcagcggcagcccggaacagccaaaagcagcaccggcccaagctgtt
caggaagacaagaatcaacgcaaccagcgcggcgaacgcaaagacggcggccgcaatcag
cgcaatcgcagccgtggcggccgcggtggtcgtgagcgcggtgaagagcgcgaagaaaca
gcgacaaaaccggcaccggcagcaagcgaaacgcaaaatgctcgtccgcctcgccctcct
cgtgaaccacgcgaaccgcgtgaaccacgtgacggcaatgaaggacgccgcgaacgtact
ccacgtccaccgcgcgaagagcgcaaggaagtcgttgctgaggatgcatccttgttgcca
gttgacgcagtagttgccactaccgcagcagccagaacaacaccgccagcggctgaagct
aacggcaacgttgctgtcgtactggatgaaaacggtattccggtagaagccgttgaaggc
gaagagcaaccgcgtcgtcgtcgtcgtcgtggcggccgtaaccgtaatcgtcgtgatcgt
gacaataccgaatccggtactgaaaacgaaagcaatgaagatggcgtagttgcgctgcaa
gatgacagtttgcaggatgaagcagctcagactccagccacagcacacgtaagtgcaacg
gaaatggcgtcaaccgtcgccagcacagtccgccaggaaacagtcgcacacgtaacggaa
gccagcattgcaagcgaagcgccagtcagcgcattgacatcggcaatcgctgcaccgctg
attccgcaagaagtgatgcctcaggccgaacctgaagttgcagcaccagttgttgccgta
cctgctgctccggcgccggaaccggaaccagtcgttgctgcaccagcattcgttgccgtt
gaagcagcgccggtcgttgaagcagtgcctgctatcgagccggcaccggttgccgctgtc
acacctgcgccaatgccccaaccagcgcccgtcattgctccagtcccggcccctgttgcg
acagtctcagccgctccggcagcaagcacgagtaaagttgatgacttgagcgaagtgctg
caaagtgccggtttggtattggcgtccaccgatccggaaaaattgcgtgcagcacaggaa
gaagctgcaaagtttgttccgccaccacgcgtaccgcgtgaacgcaaaccattgccaccg
caatcgacggagcctttggtgcaaatggaaacaaagcgataa
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