Herminiimonas arsenicoxydans: HEAR2166
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Entry
HEAR2166 CDS
T00490
Symbol
rhlE2
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
har
Herminiimonas arsenicoxydans
Pathway
har03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
har00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HEAR2166 (rhlE2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
har03019
]
HEAR2166 (rhlE2)
Enzymes [BR:
har01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HEAR2166 (rhlE2)
Messenger RNA biogenesis [BR:
har03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HEAR2166 (rhlE2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
UvrD-helicase
Utp25_C
DegT_DnrJ_EryC1
Motif
Other DBs
NCBI-ProteinID:
CAL62303
UniProt:
A4G716
LinkDB
All DBs
Position
2167195..2168544
Genome browser
AA seq
449 aa
AA seq
DB search
MSFTDLGLADGIVRAVTEHGYSIPTPIQAQAIPAVLAGGDLLAGAQTGTGKTAGFTLPIL
HRLATSGTPHASASAQRPIRALVLTPTRELAAQVEESVRTYSKYLNLNSAVIFGGVGINP
QIKLLKHGVDILVATPGRLLDHMQQGTVNLSKVEILVLDEADRMLDMGFIKDIRRVLAVL
PKNRQNLLFSATFSNEIKALADGLLNSPAMIEVARRNSTVEVIEQKIHPVDRDKKHPMLA
HLIKTNNWSQVLVFTRTKHGANKLVEQLEKDGISGMAIHGNKSQSARTRALSEFKDGSLQ
VLVATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELDML
KDIEKLIKRKLPSEVIVGFEPDLNAKPQPIQRRSNDAPGRRPQGRGNAPAKSAKAPGAKP
SGPNGQVRSFGGNANARPAAPHRSGGRGR
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttactgacctcggcctcgccgatggaattgtgcgcgccgtcaccgaacacggt
tacagcatccctaccccgattcaagcacaggcgatcccggccgtactggccggcggcgat
ctgctggccggtgcacaaaccgggactggcaaaactgccggtttcaccctgccgattttg
caccgtcttgccaccagcggcacaccgcatgcatcggcttccgcacaacgccctatccgc
gccctggtgttgacacctacccgcgaactggcggcacaagttgaagaaagcgtgcgcact
tacagcaagtatttgaatctgaactccgctgttatcttcggtggcgtcggcatcaatccg
caaatcaagttgctgaagcacggcgtcgatattctggtcgccacgcccggccgtttgctg
gaccatatgcagcaaggcaccgtcaatctgagcaaggtggaaatcctggttctcgacgaa
gccgaccgcatgctcgacatgggttttatcaaggacattcgtcgcgtactcgccgtactg
ccgaagaatcgccagaatttgttgttctcggccaccttctccaatgagatcaaggcactg
gccgatggcttgctgaattcgcctgccatgattgaagttgcacgtcgcaattccaccgtt
gaagtcatcgaacagaaaatccatcctgtggatcgcgacaaaaaacatcctatgctcgcg
catctgatcaagaccaataactggtcgcaagtgctggtcttcacccgcaccaagcacggc
gccaacaaactggtcgagcaactggaaaaagacggcatcagcggcatggcaatccacggc
aacaagagtcagtccgcacgcacacgcgcgctgagcgaattcaaggatggcagcctgcag
gtattggtcgccaccgatatcgccgcccgcggtatcgacatcgatcagctgccgcacgtc
gtcaactacgacttaccgaatgtgccggaagattacgtgcatcgcatcggtcgtaccggc
cgcgccggcgccaccggtgaggcagtatcgctggtatgcgtcgatgaactggatatgctg
aaagacatcgaaaaactgatcaagcgcaaattgccgtcggaagtgatcgtcggttttgaa
ccggatctgaatgccaagccacaaccgatccagcgccgcagcaacgacgcaccgggccgc
agaccgcaaggacgtggcaatgcgccagccaaatccgccaaggcacctggagccaagcca
agcggtcccaacggtcaggtgcgcagcttcggcggcaatgccaatgcacgtccggctgcg
ccacaccgctcgggcggccgcggccgataa
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