Herminiimonas arsenicoxydans: HEAR3172
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Entry
HEAR3172 CDS
T00490
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta' (RNAP subunit beta') (Transcriptase subunit beta') (RNA polymerase subunit beta')
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
har
Herminiimonas arsenicoxydans
Pathway
har03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
har00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HEAR3172 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
har03021
]
HEAR3172 (rpoC)
03400 DNA repair and recombination proteins [BR:
har03400
]
HEAR3172 (rpoC)
Enzymes [BR:
har01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HEAR3172 (rpoC)
Transcription machinery [BR:
har03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HEAR3172 (rpoC)
DNA repair and recombination proteins [BR:
har03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HEAR3172 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
CAL63281
UniProt:
A4G9U4
LinkDB
All DBs
Position
complement(3124115..3128359)
Genome browser
AA seq
1414 aa
AA seq
DB search
MKALLDLFKQVQQNEQFDAIKIGLASPEKIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPTAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVTDPGMTPLKRCQIMSEDDYAAKYEEFGDDFTAFM
GAEGIRELLRAIDIDRDAEMLRQELKDSKSEAKIKKYAKRLKVLEAFQRSGIKPDWMIME
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPEIITRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRPLKSLAEMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPQ
LKLHQCGLPKLMALELFKPFIFNKLELMGLATTIKAAKKLVEIQEPVVWDILEDVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSIEAQMEA
RTLMLASNNILFPSNGEPSIVPSQDIVLGLYYATREAINAKGEGMMFPDVSEVIRAYDNK
EVELATRITVRITEYPKNVETGEFEKTVTRYETTVGRAILSEILPKGLPFSVLNRALKKK
EISRLINLSFRKCGLRATVVFADQLLQSGFRLATRAGISICVDDMLVPSQKVDIIATAEG
EVKQIEQQYSSGLVTAGERYNKVVDIWGKAGDDVGKAMMDQLKVEDVTKRDGTKTTQESF
NAIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVTQDLVVIEDDCGTSNGASMKALVEGGEVIEALRDRI
LGRVAANDIVNPETQATLYAAGTLLDEDMVEEIERLGIDEVKVRTPLTCDTRFGLCALCY
GRDLGRGSMVNAGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSNGTVR
FTATMRYVTNGKGGQIVISRSGEVLITDDLGRERERHKVPYGATLIVKDGLVIKAGTALA
TWDPLTRPIITEYTGTVKFENVEEGSTVARQIDEVTGLSTLVVIDAKRRGSVTKTVRPQV
KLLNEQGEEVKIAGTEHAVTIGFQVGALITVKDGQQVTVGEVLARIPTESQKTRDITGGL
PRVAELFEARSPKDAGMLAEVTGTVAFGKETKGKQRLEITDMDGNKHEFLITKDKQVLVH
DGQVVNKGEMIVDGPADPQDILRLLGIEALARYIVDEVQDVYRLQGVKINDKHIEVIVRQ
MLRRVQVVDAGDANYIVGEQVERSELLDENDRVIAQGKIPATYENVLLGITKASLSTDSF
ISAASFQETTRVLTEAAIMGKRDGLRGLKENVIVGRLIPAGTGLAFHRARKEKESWEAEE
RTALLQSEKAARAAEAEAQFADISSTPDSDTDAS
NT seq
4245 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcactgctcgatctattcaagcaagttcagcaaaacgaacaattcgacgcgatc
aaaattggtctggcgtccccggaaaaaatccgttcgtggtcctacggcgaagtcaagaag
ccggaaaccatcaactatcgtacgttcaagcccgagcgcgacggcctgttctgtgcaaaa
atctttggccctatcaaggattacgaatgcctgtgcggcaaatacaaacggctgaaacac
cgcggcgttatctgcgaaaaatgcggcgttgaagtcacattggccaaagtgcgtcgtgaa
cgcatgggccacatcgagttggcatcgccaaccgcgcatatctggttcctgaaatcgctg
ccatcccgtctgggcatggtgctcgacatgacattgcgggatatcgaacgcgtcctgtat
ttcgaagcctacgttgttaccgatccaggcatgacgccgctgaagcgttgccagatcatg
tcggaagacgattacgcagctaaatacgaagaattcggcgacgacttcaccgcattcatg
ggcgccgaaggcatccgtgaattgctgcgcgccatcgacatcgatcgcgatgccgagatg
ctgcgccaggaattgaaagattccaaatccgaggccaagatcaagaaatacgccaagcgc
ctgaaagtgctggaagcgttccaacgttcgggcatcaagcctgactggatgatcatggaa
gtgttgccggtgttgccgccagaactgcgcccattggtgccgctggatggtggccgtttc
gcaacttccgatctgaacgatctgtatcgccgcgtcatcaaccgtaacaaccgtttgaag
cgtctgatggaactccgcgcaccggaaatcatcacccgcaacgaaaaacgcatgttgcag
gaagcggtcgattcgctgctggataacggccgtcgcggtaaagcgatgactggcgccaac
aagcgtccgctgaagtcactggcagaaatgatcaaaggcaagggcggtcgtttccgtcaa
aacttgctgggcaaacgcgtcgattactcgggtcgttccgtgatcgtcgtgggtccgcaa
ttgaaactgcatcaatgcggtttgccgaaattgatggctttggaattgttcaagccattc
attttcaacaagctcgaattgatgggtctggcaacgaccatcaaggctgcgaaaaaactg
gttgagatccaagaaccggttgtgtgggacattctggaagacgtgatccgcgaacatccg
gtcatgctgaaccgcgcacctaccttgcatcgtcttggtatccaggcgtttgaaccggtc
ctgatcgaaggcaaggcaattcaattgcacccattggtctgcgctgcgtttaatgccgac
tttgacggcgatcaaatggcggtccacgttccactgtcgatcgaagcacagatggaagca
cgcaccttgatgctggcttcgaacaacatcctgttcccatcgaacggcgaaccatcgatc
gttccttcgcaagatatcgtgctgggtctgtactacgcgactcgcgaagcgatcaatgcc
aagggtgaaggcatgatgttcccggacgtgtccgaagtcatccgcgcctacgacaacaaa
gaagttgaactggcaacgcgtatcaccgtacgtattaccgagtatccgaagaacgtcgaa
accggcgaattcgaaaaaacggtaactcgttacgaaacgaccgtcggtcgcgcgatcctg
tccgaaattctgcctaaaggcttgccgttctccgtattgaaccgcgcgctgaaaaagaaa
gaaatttcgcgcctgatcaacctgtccttccgtaagtgcggtctgcgcgctacggtagta
ttcgctgatcaattgctgcaatcgggcttccgtctggcaacgcgtgccggcatctcgatt
tgcgtcgacgacatgctcgttccatcgcaaaaagtcgacatcattgcgaccgccgaaggc
gaagtcaaacagattgaacagcaatactcgtccggtctggttaccgctggcgaacgttac
aacaaagtggtggatatctggggcaaggccggcgacgacgtcggcaaggccatgatggat
caactcaaggttgaagacgtcaccaaacgtgatggcaccaaaacaacacaagaatcgttc
aacgcgatttacatgatggccgactccggtgcgcgcggttccgcagcacagattcgccag
cttgccggtatgcgtggcctgatggcgaaaccggatggttccattatcgaaacgccgatc
accgcgaacttccgcgaaggtctgaacgtgttgcagtacttcatctcgactcacggtgcg
cgtaaaggtctggccgataccgcgctgaaaacagcgaactcgggttacctgacacgccgt
ctggtcgacgtgacacaagatctggttgtgatcgaagatgattgcggcacctcgaacggc
gcctcgatgaaagcgctggtcgaaggcggtgaagtcattgaagcattgcgtgaccgtatc
ctgggtcgcgttgctgcgaacgacattgtcaatcctgaaacacaggcaaccctgtacgcg
gccggcaccttgctggacgaagacatggttgaagaaatcgaacgcctcggcatcgatgaa
gtaaaagtacgcacgccattgacttgcgacacgcgcttcggcctgtgcgctctgtgttat
ggccgtgatctgggtcgtggttcgatggtcaacgccggtgaagcagtcggtgttatcgcg
gcacaatcgatcggtgagccaggcacccagctgaccatgcgtaccttccacattggtgga
gcggcgtcgcgtgcggcagttgcttcgtcggtggaagccaaatcgaacggtaccgtacgc
ttcactgcgaccatgcgttacgtcaccaacggaaaaggcggtcagatcgtcatctcccgt
tccggcgaagtgctgatcacggatgacctcggccgggagcgtgaacgtcataaagtaccg
tacggcgcgaccctgatcgtcaaagacggtctggtcatcaaggccggtactgcattggca
acatgggatccgttgacccgtcctatcattaccgaatacaccggtacggtgaaattcgag
aacgtcgaagaaggttcgaccgttgcacgtcagatcgatgaagtcaccggtctgtcgact
ctggtcgttatcgatgcgaaacgtcgcggctcggttaccaaaaccgttcgtccacaggtc
aaactgctgaatgaacaaggcgaagaagtcaaaatcgccggtaccgaacacgcagtgacg
atcggcttccaggttggtgcgctgatcactgtcaaggacggtcagcaagttaccgtcggt
gaagtgctggcacgtattccgaccgaatcgcaaaaaacacgtgacatcaccggtggtctg
ccgcgtgttgccgagttgttcgaagcgcgttcgccgaaagatgccggcatgctggcagaa
gtcaccggtacggttgcgttcggtaaagaaaccaaaggcaagcaacgtctggaaatcaca
gacatggacggcaacaagcacgagttcctgatcaccaaggacaagcaagtgctggtacat
gacggccaggttgtgaacaagggcgagatgattgttgacggcccagctgatccacaagac
attctgcgtttgttgggtatcgaagcgctggcacgttacatcgtcgacgaagtgcaagac
gtgtaccgtttgcaaggcgtgaagatcaacgacaagcacatcgaagtcatcgtgcgccag
atgttgcgtcgcgtccaagtggttgatgccggcgatgcgaattacatcgtgggcgaacaa
gtcgaacgttcggaattgctggacgaaaacgatcgcgtgattgcccaaggcaagatccct
gcaacctacgaaaacgtgttgctgggtattaccaaggcatcgctgtcgaccgactccttc
atctctgctgcatcgttccaggaaactacacgtgtcctgaccgaagctgcgatcatgggc
aagcgcgatggtttgcgtggcctgaaagaaaacgtgatcgttggtcgtctgatcccggcc
ggtaccggccttgcgttccaccgtgcacgcaaggaaaaggaatcgtgggaagcggaagag
cgtacggcattgctgcagtcggagaaagctgctcgcgcagccgaagcggaagcgcagttt
gctgatatctccagtacgcctgacagcgatactgacgcttcataa
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