Halioxenophilus aromaticivorans: R50071_06700
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Entry
R50071_06700 CDS
T10756
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
haro Halioxenophilus aromaticivorans
Pathway
haro03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
haro00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
R50071_06700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
haro03019
]
R50071_06700
03009 Ribosome biogenesis [BR:
haro03009
]
R50071_06700
Enzymes [BR:
haro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
R50071_06700
Messenger RNA biogenesis [BR:
haro03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
R50071_06700
Ribosome biogenesis [BR:
haro03009
]
Prokaryotic type
rRNA helicases
R50071_06700
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
AAA_30
DUF6702
WH_MCM3_C
AAA_19
Flavi_DEAD
Pox_VERT_large
Motif
Other DBs
NCBI-ProteinID:
BFM05466
LinkDB
All DBs
Position
complement(724827..726599)
Genome browser
AA seq
590 aa
AA seq
DB search
MSDSQTSDFASLGLPAPLCATLQNLGYEQPSPIQAQSIPSLLEGKDLLGLAQTGTGKTAA
FALPVLSRINLKQNSPQALVLAPTRELAIQVAEAFQSYAANIDGFHIAPIYGGQDMRAQL
RQLKRGVHVVVGTPGRVMDHLRRGSLDLANLSMMVLDEADEMLRMGFIDDVEWILDHTPD
QRQVALFSATMPPAIKKITNNYLNDPVRIQIEAKTKTVDRIEQQYVMVSPARKIDALTRI
LEVEDFDGLIMFVRTKTATVELAQKLEARGYSSAALNGDINQKQREITIEQLKKGKIDVV
VATDVAARGIDVPRITHVVNYDIPHDNEAYVHRIGRTGRAGRSGKAILLVTPRERHLLRS
IERSTGQPIEEGKLPTSDELTNRRVTRFRESILETLDSQDLSEFTKLVEEVQAEANVSSD
EIAAALAYMAQSSHPLFVEKDKLLDEPIAVRNDRGRDRDRGDKRSGGRKERSNQPMDYYR
VEVGRKDGVKPGDLVGAIANEANMRSSNIGNITINDSHSFVQLPVGLGEDTQRLLSKVWV
RNKPLKLQKTDLDHAPQEKRGRNDGDKRRRDNASNRKFDDNRGNRRSGHR
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atgtctgattctcaaaccagcgattttgcttcgctgggtttgcctgcgcccctgtgcgca
acgttgcaaaacctcggttacgagcaaccttcccccattcaagcgcaaagtattcctagc
ctgctggaaggcaaagaccttttaggtttggcgcaaaccggtaccggtaaaaccgcagcc
ttcgccctgcccgttttgtcgcgtattaacctaaaacaaaactcgccccaagcgctggtt
ttagcgccaacccgcgagctggcgattcaagtagccgaagcgttccaaagctacgctgcg
aacattgatggctttcacattgcgcccatttacggtggccaggacatgcgcgcccaattg
cgccagttaaagcgcggcgtgcacgtcgtggtaggcaccccagggcgcgttatggaccac
ctgcgtcgaggcagtttggacctcgccaacctatccatgatggtgttggatgaagccgac
gaaatgctgcgcatgggttttattgacgacgtagagtggatcttggatcacacaccagat
cagcgccaagtggcgttgttcagtgccaccatgccaccggccatcaaaaaaatcactaac
aactacctcaacgacccggtgcgcattcaaattgaagcgaaaaccaaaaccgtggatcgc
attgagcagcagtacgttatggtcagccctgcccgtaagattgatgccttaacccgcatc
ttagaagtcgaagacttcgacgggctgattatgtttgtgcgcaccaaaaccgccaccgtt
gaactggcccaaaaattggaagcgcgcggctattctagcgccgctctcaacggcgacatc
aaccaaaagcagcgcgagatcaccatcgagcaactgaaaaaaggcaaaattgatgtggtg
gttgccaccgacgttgccgcccgtggtatcgacgtacctcgcatcacccacgtggtgaac
tacgatatcccacacgacaacgaagcctacgtacaccgaattggccgcactggccgtgcc
ggccgctcgggtaaagcaattttgctggttactccacgcgagcgtcacctgttgcgatcc
attgagcgcagcaccggccagcccatcgaggaaggcaagctgcccacatcggacgagcta
accaaccgccgtgttacgcgtttccgcgaaagtattttggaaaccttggactcacaggat
ttatcggaattcaccaagctggtggaagaagtgcaagccgaggccaatgttagctccgac
gaaatcgctgcggccttagcctacatggcacagtcatcacaccctctgtttgtggaaaaa
gacaaactgttggacgagccaattgccgtgcgtaacgaccgtggccgcgaccgcgaccgt
ggcgacaaacgctccgggggccgcaaagaacgcagcaaccaacccatggattattaccgt
gtggaagtgggccgcaaagacggcgttaaacccggcgatttagtcggcgccatcgccaac
gaagctaacatgcgcagcagcaacatcggcaacattaccatcaatgacagtcacagcttt
gtgcaactgccggttggtttgggcgaagacacccagcgtttattgagtaaggtttgggta
cgcaacaagcctttgaaactgcaaaaaaccgacttggaccacgcgccccaggaaaaacgc
ggccgtaacgatggcgacaaacgacgccgcgataacgccagcaatcgcaagtttgacgat
aaccgcggcaaccgtcgcagcggtcatcgttaa
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