Halioxenophilus aromaticivorans: R50071_07940
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Entry
R50071_07940 CDS
T10756
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
haro Halioxenophilus aromaticivorans
Pathway
haro03020
RNA polymerase
Brite
Enzymes [BR:
haro01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
R50071_07940 (rpoC)
Transcription machinery [BR:
haro03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
R50071_07940 (rpoC)
DNA repair and recombination proteins [BR:
haro03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
R50071_07940 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
BFM05590
LinkDB
All DBs
Position
898545..902768
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLNLLKSQGQNEEFDSIRIGLASPDMIRSWSFGEVKKPETINYRTFKPEREGLFCAK
IFGPVKDYECLCGKYKRMKHRGIICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSL
PSRIGLLLDMTLRNIERVLYFESYVVTDPGMTTLEKSQLLTDEQYFEAMEEFGDEFEAKM
GAEAIQELMRDIDIEAEVQELREEIPSTTSETKVKKLSKRLKLLEAFYNSGNDPEWMVLE
ALPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVTGPT
LKLHQCGLPKKMALELFKPFIFSKLELRGLATTIKAAKKMVEREEPVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTIEAQLEA
RALMMSTNNILSPASGEPIIVPSQDVVLGLYWMTRERINVPGEGMVFSDPAEVDRAFNAE
KVHLQARIKCRITESVIREDGEMEKNTSIVDTTVGRVLLWEIVPEGMPFELVNRNMVKKA
ISALINYCYRVVGLKQSVIFADKLMYTGYAYSTRSGSSIGVNDFEIPAAKHEIVSKADEE
VAEIEAQYASGLVTQGEKYNKVIDIWSRANDLVAKSMMEGISKESVTNREGEEEQQDSFN
SVFMYADSGARGSPAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVGQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVITETDCGTDAGLTMAPVIEGGDIIESLGDRIL
GRVIARDVLKEGSDEILIPAGVMIDEAWVERVEEMGIDEVQVRSPITCESRYGICAQCYG
RDLARGHRANAGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRASAADSIQVKQPGTVRL
HNVKTVEREDGILVAVSRSGELAVADGSGRERERYKIPYGANITVTDGSDVDGGQVVAKW
DPHTHPIITEVGGVVRATGMEDGLSIRRQTDELTGLTSIEVLDPAERPAAGKDLKPAITL
YDEEGNEKTLANSNQPAHYLLPAKALLNLTDGEVIKAGDVIARIPQESGGTKDITGGLPR
VADLFEARKPKEPSILAEISGTVSFGKETKGKRRLVITPPEGQVMPDGSTHYEELIPKHR
QLTVFEGETVAKGEVVSDGPSNPHDILRLQGVEALANYITNEIQDVYRLQGVKINDKHIE
TIVRQMLRKVEILGMGDSSFVKGEQVEYANVLQENERLRAEGMQPATYERQLLGITKASL
ATESFISAASFQETTRVLTEAAVTGKVDTLRGLKENVVVGRLIPAGTGLAYHEKRRQQRS
EDAVVSEGPSAEEVEAALTEALKSSAN
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacttactaaaccttctgaagtcccaaggacaaaatgaagaatttgactcgatt
cgtatcggccttgcatcgccggatatgattcggtcttggtcttttggtgaagtaaaaaaa
cctgagaccatcaactaccgaaccttcaagcctgagcgtgaaggtttgttttgtgccaaa
atttttggcccagtaaaagactatgagtgcttgtgcggcaagtacaagcgtatgaagcac
cgcggcatcatttgtgaaaaatgcggtgttgaagttaccttggctaaagtgcgtcgtgag
cgcatgggccacattgagctggctagcccagttgctcatatctggttcttgaaatcctta
ccaagccgtatcggtttgctgttggatatgaccctgcgcaatatcgaacgtgtgttgtat
tttgaatcctacgtggtaaccgaccccggcatgaccaccttggagaagagccaacttctg
accgacgagcagtatttcgaagccatggaagaatttggtgacgaattcgaagccaaaatg
ggcgccgaggccattcaagagttgatgcgtgacatcgacattgaagccgaagtacaagag
ctgcgtgaagaaattccaagcacgacctctgaaaccaaagttaagaagttgtccaagcgc
ttgaagctgctggaagccttctacaactctggcaacgatccagagtggatggtgttagag
gcgctgcctgtactaccaccggatttgcgtccgttggtaccgctggatggcggccgcttt
gctacctccgatttgaacgatttgtatcgccgcgtcatcaaccgtaacaaccgtttgaag
cgtctgctggacttaaacgctcctgacatcatcgtgcgcaacgaaaagcgtatgctgcaa
gaagcggtagatgcactgttggataacggtcgtcgcggtcgcgccattaccggctctaac
aaacgcccactgaaatcattggccgatatgatcaaaggtaagcagggtcgtttccgtcaa
aaccttctgggtaagcgtgttgactactccggtcgttcggtcatcgtaaccggcccaact
cttaagctgcaccagtgcggtctgcctaagaaaatggccttggaattgttcaagccgttt
atcttcagcaaactggaattgcgtggtctagccaccaccattaaagccgctaagaaaatg
gtcgagcgtgaagagcccgtggtatgggatatcctcgacgaagtcattcgtgagcacccg
gtactgctaaaccgtgcaccaaccttgcaccgtttgggtattcaggcgtttgaacccgta
ctgattgaaggtaaggccattcagttgcacccattggtgtgtgcagcctacaacgccgac
ttcgacggcgaccaaatggcggttcacgtacctttgactattgaagctcagcttgaagct
cgcgctttgatgatgtcgaccaacaacattttgtcaccggcctccggcgagccgattatc
gtaccgtcccaagacgtggtattgggcttgtactggatgactcgtgagcgtatcaacgtg
cccggtgagggcatggtgttctctgatccagctgaagtggatcgcgcgtttaacgccgag
aaagttcatctgcaagcgcgtatcaagtgtcgtatcaccgagtctgtgattcgtgaagac
ggcgaaatggaaaagaacacctccatcgtggataccacggtaggtcgtgtacttttgtgg
gagatcgtacccgagggtatgccgtttgagctggttaaccgaaacatggttaaaaaggcc
atctcggcactgatcaactactgttaccgcgtggtgggattgaagcaaagcgttattttt
gctgacaaactgatgtacaccggttatgcctactcaacacgctctggttcgtccattggt
gtaaacgattttgaaatcccagccgctaagcacgagatcgtgtctaaggccgatgaagaa
gtagccgaaatcgaagcgcagtatgcctctggtttggtaactcagggtgagaaatacaac
aaagtgatcgatatctggtctcgcgccaatgatttggttgccaagtcgatgatggagggt
atttcgaaagagtccgttactaaccgcgaaggcgaagaagagcagcaagattcattcaac
tcggtatttatgtacgccgactccggtgctcgtggtagccctgcgcagattcgtcagttg
gccggtatgcgtggtttgatggctaagccagatggctcgatcatcgaaacgcccattacc
gcaaacttccgtgaaggtttgaacgttggtcagtacttcatctcgacccacggtgcgcgt
aaaggtttggctgataccgcactgaaaaccgcaaactcgggttatctgactcgtcgtttg
gtggacgttgctcaggacgtcgtaatcaccgagaccgattgtggtaccgacgctggctta
accatggcgccggtgatcgaaggtggtgacatcatcgaatccctgggtgatcgtatcctg
ggccgtgtgattgcgcgtgatgtgttaaaagaaggcagcgatgagattctgatccctgcc
ggcgtgatgatcgatgaagcttgggtagaacgtgtggaagagatgggtattgacgaggta
caagtacgctcgccaattacctgtgagtctcgttacggtatctgtgctcagtgttatggt
cgtgatcttgcgcgtggccaccgcgccaatgccggtgaagcggtcggcgttattgctgcc
cagtccattggtgagcccggtacccagctgactatgcgtaccttccacattggtggtgct
gctagccgtgcgtctgctgcagacagcatccaggttaaacagcctggtaccgtccgcctg
cacaacgtgaaaaccgttgagcgtgaagacggcatattggttgcggtatcccgttccggt
gagttggccgtagccgacggcagcggtcgcgagcgtgagcgctataagattccttacggt
gccaacattactgttaccgacggttcagatgtggacggcggccaggtagtggcgaaatgg
gatccgcacacgcacccaattattaccgaagtgggtggtgtggttcgtgccactggcatg
gaagatggtctttctattcgtcgtcaaacagacgagctaactggtttaacctctatcgag
gtgctggacccagccgagcggcccgcggccggtaaagacttgaaacctgctatcaccttg
tatgatgaagaaggtaacgagaaaactctggccaacagtaaccagcccgcccactacttg
ttgccagctaaggctttgttaaacctaaccgatggtgaagtaatcaaggctggtgatgta
atcgcccgtattcctcaggaatctggcggtactaaagatattaccggtggtctgccacga
gttgctgacttgtttgaagcgcgtaagccaaaagagccctctatcctggcggaaatcagc
ggtactgtttccttcggtaaagaaaccaaaggtaagcgtcgcttggtgattactccaccg
gaaggtcaagtaatgccagatggcagcactcactacgaggagctgattcctaagcatcgt
cagctgactgttttcgaaggcgaaactgtggctaagggtgaagtggtatcggatggtccg
tccaacccacacgacatcttgcgcttacagggtgtggaggccttggccaactacatcact
aacgaaatccaagatgtttaccgtttacagggtgtaaaaattaacgataagcacattgag
accatcgtgcgtcagatgttgcgtaaagttgagatccttggaatgggcgactcttccttc
gttaagggtgagcaggttgaatacgccaatgtgctgcaagaaaatgagcgtttacgcgcc
gagggcatgcagccagctacctacgagcgtcagctactgggtatcaccaaggcctctttg
gcaaccgagtcgtttatctctgcggcctcgttccaagagaccactcgcgttctgaccgaa
gcagcggtaaccggcaaggttgatactttgcgcggcctgaaagaaaacgttgtagtaggg
cgtttaattccagccggtaccggtttggcctaccacgagaagcgtcgtcagcagcgtagt
gaagatgccgtggtgagcgaaggtccaagtgctgaagaagtcgaagcagccctgaccgaa
gcgcttaagtccagcgctaactag
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