Halioxenophilus aromaticivorans: R50071_21950
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Entry
R50071_21950 CDS
T10756
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
haro Halioxenophilus aromaticivorans
Pathway
haro03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
haro00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
R50071_21950 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
haro03400
]
R50071_21950 (mfd)
Enzymes [BR:
haro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
R50071_21950 (mfd)
DNA repair and recombination proteins [BR:
haro03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
R50071_21950 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
Cas3-like_C_2
UB2H
RecG_dom3_C
ERCC3_RAD25_C
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
BFM06991
LinkDB
All DBs
Position
complement(2501500..2504946)
Genome browser
AA seq
1148 aa
AA seq
DB search
MFSPLEPPHYSPQSSIWGNLSPSAAALTFYHAVRRNKGAHLVVTTDNRSALQFEQELRSY
AQGDSQCPEIIHFPDWETLPYDHFSPHADIISDRLEALFKLSAANSFILVVPFSLLMVRL
PPRGYVDAHSLILAKDHRLDIESVCVRLDSAGYHRVDTVMEHGEYAVRGALVDIFAMGSN
TPYRIDLFDDEIETIRTFNPSTQITIDNINEIKLLPAHEFPLDDQGIKRFRDQWHSQFDV
DHKSCPIYQDVCEGISPPGIEYYLPLFFEQLETLFDYIGEGAQIYSYGDLPNAGESFWSE
ITARFENLNVDPKRPLLAPNKIYLASDQVFALLKQVEHTKMRPETDSGVAAQVQPLPNLT
ADQHSNKPLANLHTFLSQSDATVLICADTQGRQEILLEQLNKGRNKVAAVANYNAIFEHP
GEQLITVCPIEKGFQLTAGDGHTIALVGEADLYGTRATPLRRRKKQIDATEQVIKHLTEL
SLDSPVVHLEHGVGRYRGLQIIDIDGQANEFLTLEYADQAKLYVPVANLHMISRYGGADE
QQAPLHKLGTDAWSKAKQKAAEKVRDVAAELLNVYALRAAKKGKAFDYSKELYQQFAKSF
PYQETEDQQSAIDAVIADMGSAQPMDRLVCGDVGFGKTEVAIRAAFIAAIAGKQVALMVP
TTLLAQQHYDNFTDRFAQWPVKVGLLSRFQSTSQINATLAELKDGKVDIIIGTHKLIQGD
VKYNDLGLVIIDEEHRFGVRQKERFKSLRAEIDVLALTATPIPRTLNMSMQGVRDLSIIA
TAPAKRLAVKTFVQEKQSSLVKEAVLREILRGGQVYYLHNDVKSIDKTAADLQVLVPEAR
VGIGHGQMRERELEGVMNDFYHKRFNVLVATTIIETGLDIPNANTIIIERADKFGLAQLH
QLRGRVGRSHHQAYAYLLTPPEKKLSSDASKRLEAISVATELGSGFTLATHDLEIRGAGE
LLGEEQSGQIQHVGFSLYMDMLDRAVKAIKSGKLAEAKLENDEQTDINLRISALIPDDYL
PDVNQRLLLYKRLANTTNEQEIFDLQVEIIDRFGSLPEPTKNLIRVTNLRLKAEQLGIGK
IEANNEQIKIEFQKETSIDPMKIVNLVQKQPQRYALDGANKLKYRVEMSDAHAKLEQAEQ
LMQTLQSK
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgttttcacccctcgagccgccacactacagccctcagtcgtccatttggggcaacttg
tcacctagcgccgccgccctgacgttctatcacgccgtgcgtcgtaataaaggcgcacac
ctggtagtcaccactgacaaccgctccgcccttcaatttgagcaagaactgcgcagctac
gcccagggtgacagccagtgccccgagattatccacttcccagactgggaaacgctgccc
tacgatcacttctcaccccacgcagacatcatctcggatcgactggaggcgctttttaag
ctatcagcggccaacagctttattttggtagtgccgttttctctgttaatggtgcgcttg
ccgccccgagggtatgtggacgctcacagtctgatactggccaaagaccatcgactagac
attgagtctgtctgcgtgcggttagatagcgctggatatcaccgggtggacacggtcatg
gagcatggcgaatacgccgtgcgcggtgcattggtggatattttcgctatgggctctaat
acgccctatcgaattgatctcttcgatgacgaaattgaaaccattcggactttcaacccc
agcactcaaatcaccatcgacaacatcaacgaaattaagctgttgccggcccacgagttc
ccactggatgatcaaggcatcaaacgattccgcgaccagtggcattcgcaattcgatgtc
gaccacaaaagctgccctatttaccaagatgtttgcgaaggcatttctccaccgggtatc
gagtactacctaccgctattttttgagcaacttgaaacgctgtttgattacatcggcgaa
ggcgcgcagatttatagctatggtgacctgcccaatgctggagagtcattttggtccgag
ataaccgcccgttttgagaatcttaatgtcgaccccaaacggcctctactagcaccgaac
aaaatttatctcgcctcagatcaagtgttcgccctgttaaagcaggttgagcataccaag
atgcggccagagaccgactccggggtggcagcacaggtgcaaccactgcccaacctcacc
gccgatcagcactctaataaacccctggccaacctccacacctttttgagccaatccgat
gccactgttctcatttgtgccgatacccaaggccgacaagaaatcctgttagagcaattg
aataaaggaaggaacaaagttgctgctgtagcgaactacaatgcgatttttgaacatcct
ggggaacaactgatcaccgtttgcccaatcgaaaaaggatttcagctcacagccggtgat
ggccacaccatcgctttagtgggcgaagccgatctttacggcacccgggcaacgcctttg
cggcggcgcaaaaagcagattgatgccacagaacaggtgatcaagcatttaaccgagttg
tctttggattcaccggtggtgcatctcgagcacggcgttggccgatatcgaggcttacaa
atcatcgatatcgatggccaagctaacgaatttctaacccttgaatacgctgatcaagcg
aaactgtacgtcccagtggccaatctgcacatgatcagccgctacggtggcgccgacgag
caacaggccccgctgcacaaactggggaccgatgcatggagcaaagccaagcaaaaagcg
gcggagaaagtccgcgatgtggccgccgaactgttgaatgtttacgccctgcgggccgcc
aagaaaggcaaggccttcgactactcaaaagagctgtaccaacaattcgccaagagcttt
ccttaccaggaaaccgaagatcaacaatctgccatagatgccgttattgcggatatgggt
tcagcgcaacccatggaccgactggtgtgtggggatgtgggttttggtaaaaccgaagtt
gccatccgagcggcgtttattgctgccattgccggcaagcaggttgctttgatggtaccc
accaccctactcgcccaacagcattacgataatttcaccgaccgctttgcccagtggcca
gtaaaagtaggcttgctgtctcgcttccaaagtaccagccaaatcaacgccactttagcc
gaactcaaagacggcaaagtagacattattattggtactcataagctgatccagggcgac
gtaaagtacaacgatctaggcctagtcattatcgatgaagagcatcgctttggcgtgcgc
cagaaagaacgctttaaatcgctgcgagcggaaatcgatgtgctggcactaaccgccaca
cccatcccgcgcacactcaatatgtccatgcagggcgtgcgcgatctatccattatcgcc
actgcgccggccaagcgcttagccgtaaagacctttgtacaagagaagcaatcgagctta
gttaaagaagccgtgctacgcgaaattttgcgcggcggccaggtgtactacctgcataat
gatgtcaaaagcatcgacaaaaccgcggccgatttacaggtgttggtgcccgaggcacga
gtcggcattggccacggccaaatgcgtgagcgtgaactggaaggcgtgatgaacgacttc
tatcacaagcgattcaatgtattggtagccacaaccattatcgaaacggggttagacata
cccaacgccaacaccattatcatcgagcgagctgacaagtttggcttggctcagttgcac
cagctacgcggccgagtgggacgttcccaccaccaagcctacgcctatctactcaccccg
ccagagaaaaaactcagctccgatgccagcaaacgtttggaagccatcagtgtcgccacg
gagctgggctctggctttactctagccacacacgatctggaaatacgtggcgccggcgag
ctactgggcgaagaacaaagcggacaaatacagcacgttggcttctcgctttacatggac
atgctagacagagccgtcaaagccattaaatctggcaagctggcagaagccaaactcgaa
aacgacgagcaaaccgatattaacctgcgtatctccgccttaataccagacgactattta
ccggatgttaatcagcgcctgttactgtacaagcgcttggccaataccaccaatgaacag
gagatattcgacctgcaggtggaaatcatcgaccgttttggcagcctaccggagccaacc
aaaaaccttatccgagtgaccaatctgcgcttaaaagccgaacaactgggcatcggtaag
attgaagccaacaacgaacagattaaaattgaatttcagaaagaaaccagcatagaccca
atgaaaattgtaaatctggtgcaaaaacagccccagcgctacgctttagacggcgccaac
aagctaaaataccgcgttgaaatgtccgatgcccacgctaaattggaacaggctgagcag
ttaatgcaaaccttgcagagtaaataa
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integrated database retrieval system
