Halioxenophilus aromaticivorans: R50071_28160
Help
Entry
R50071_28160 CDS
T10756
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
haro Halioxenophilus aromaticivorans
Brite
KEGG Orthology (KO) [BR:
haro00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
haro03009
]
R50071_28160 (rlmD)
Enzymes [BR:
haro01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
R50071_28160 (rlmD)
Ribosome biogenesis [BR:
haro03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
R50071_28160 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_25
Methyltransf_31
MTS
Methyltransf_15
Cons_hypoth95
Methyltransf_11
TRM5-TYW2_MTfase
Methyltransf_32
PrmA
RrnaAD
PCMT
Methyltransf_12
Methyltransf_23
Methyltransf_4
UPF0020
Ubie_methyltran
Motif
Other DBs
NCBI-ProteinID:
BFM07612
LinkDB
All DBs
Position
complement(3239490..3240716)
Genome browser
AA seq
408 aa
AA seq
DB search
MFVPQCYPGDTVRVKFTGTVKGSYRGQLINVETPSRHRRTAQCRHFDQCGGCSIMSLNQQ
QQTALKQQNVLSALHKQAGLTPDTIEPALESQPFAYRSTARLSLRHQSGGWRLGYRAKSS
HQLVAIDGCPVLAEGLQALIPELQAWLVQVPRSRRLGHIELLQDERRVAVLLRTAEPLEA
AELCGLESLCQRNGADLWLKVDQQPAKLRHGDSSTYHYSLPDLGLTLEFGPEAFTQVNRT
VNQQMVTRAMAWLAAAGKQSGKLQHVVDLYCGVGNFSLPLAQIAQSVVGVELYESMVHTA
RRNAQHNGIENALFVGADLSRGADSLAAAVSGQIDAVLLDPPRAGAAEVLPALISARVPL
LLYVSCNPATLVRDAQTLAASGYRLSKLCVMDMFPQTKHVETMALFCL
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
gtgtttgtgccgcagtgctatcccggcgacaccgtacgggtgaagttcaccggcacggtt
aagggcagttatcgcgggcagctgatcaacgtagaaacgcctagccggcaccgtcgaacc
gcacagtgccgtcattttgatcagtgcggcggttgctcgattatgtcgctgaatcaacaa
cagcagactgccttaaagcagcagaatgtactgtctgcgttacacaaacaggccgggcta
acgccagataccattgagcccgccctggaatcccaaccctttgcctatcgctcaacagcc
agactgtctttgcggcatcaatccggtggttggcgcctgggctaccgcgccaagtccagc
catcaattggttgctatcgatggctgcccggtgcttgccgaggggctgcaggcgctcatc
cccgagttgcaggcctggctagttcaggtaccgcgcagccgccgattgggccatatagag
ttgttgcaagatgaaaggcgagtggcggttttattgagaactgccgagccgctggaggct
gccgagctctgcggcttggagtctctgtgccagcgtaatggtgctgatttgtggcttaag
gtagatcagcagccggccaagctgcgacatggcgattcatcgacctaccactactcgcta
ccggatttgggtctaacgctggaatttgggcctgaggcctttacccaggtcaatcgcact
gtgaaccagcaaatggtgaccagagccatggcttggcttgctgccgcgggcaagcaaagc
gggaaactacaacatgtggttgatctttattgtggcgttggcaattttagcttgccccta
gcacagattgcccagtctgtggttggcgtggaattatatgaaagcatggtgcacacggcg
cggcgaaatgcccaacacaatggtatagaaaatgccttgtttgtcggcgcagacttgagc
cgcggcgccgatagtttggcggccgctgtgtctggccaaattgacgccgtactgttagat
ccgccacgtgcgggagccgccgaagtgctaccagcactgatcagtgcacgcgttccgttg
ctgttgtatgtgtcatgcaacccagcaactttagtacgtgatgcgcaaacattagctgct
tctggttatcgtttatccaaactgtgtgtgatggatatgtttccgcaaacaaaacatgtg
gaaacaatggcacttttttgcctttga
DBGET
integrated database retrieval system
