Halopseudomonas maritima: HV822_00965
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Entry
HV822_00965 CDS
T08633
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
harr
Halopseudomonas maritima
Pathway
harr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
harr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HV822_00965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
harr03019
]
HV822_00965
03009 Ribosome biogenesis [BR:
harr03009
]
HV822_00965
Enzymes [BR:
harr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HV822_00965
Messenger RNA biogenesis [BR:
harr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HV822_00965
Ribosome biogenesis [BR:
harr03009
]
Prokaryotic type
rRNA helicases
HV822_00965
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_19
CMS1
DUF5667
Motif
Other DBs
NCBI-ProteinID:
UJJ31785
LinkDB
All DBs
Position
206936..208639
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AA seq
567 aa
AA seq
DB search
MSDTSPAAPQFADLGLPAPLLEALNSLGYETPSPIQAEAIPTLLSGKDLLGLAQTGTGKT
AAFALPVLAGLDVSLRATQALILTPTRELALQVAEAFQRYAQNMRGFSVLALYGGSAFAP
QFKALERGAQVVVATPGRLTDHLRRGSLKLQDLRYLVLDEADEMLKMGFADDLEAVFEEV
PEQTQKALFSATMPPGVRNVARNHMKEPAEIRLHSGSSSSLETITQKVWEVSNHHKLDAM
TRLLEVEPVEAMIVFVRTKTASLELSERLEARGFAAAALNGDLSQQLREQVVDRLKRGLL
DIVVATDVAARGLDVERITHVLNYDLPHDSESYVHRIGRTGRAGRQGTAILFATPRERRL
LHVLERATGQKIEPQALPTADAVRSGRLNKLAARLNDAREHSTALHQQLVNDLQELTSLD
ASELAAALLSILPSAKTLLEPVADLPAQAPRKDRQFDRDSGLTRYKVQGGRKSGLMPKPL
VDVLVKVGGVQRQQIGHIKLFPEHTGVYLPQLDQQTLNRLAGAEINGIALQIKAWPLPEG
ELPPRDHAPRKPRRDFAKGKGKPPRKG
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacacctctccggcggctccgcagtttgccgatcttggcctgcccgcccccctt
cttgaggcgctcaacagcctcggctatgaaacaccctccccgattcaggccgaggctatc
ccgaccctgctgtccggcaaggacctgctgggtctggcccaaaccggcaccggtaaaacc
gctgccttcgccttgccggtcctggccggcctggatgtcagcctgcgtgccacccaggca
ctgatcctgacgcccacccgcgagctggccctgcaggtcgccgaagccttccagcgctat
gcccagaacatgcgcggcttctccgtgctggccctgtacggcggctcggcctttgccccc
cagttcaaagcactggagcgcggcgcccaggttgtcgtggcaacccctggccgtctgacc
gaccacctgcgccgtggcagcctgaagctgcaggatctgcgttacctggtgctggacgaa
gccgacgaaatgctcaagatgggctttgccgacgaccttgaagcggtcttcgaagaagta
ccggagcagacccagaaggcgctgttctccgccaccatgccacccggcgtgcgcaatgta
gcgcgcaaccacatgaaagagccggccgagatccgcctgcacagtggttcgagcagcagc
ctggagaccattacccagaaggtctgggaagtctccaaccaccacaagctggacgccatg
acgcgcctgctggaagtcgagccggtcgaggccatgatcgtctttgtgcgcaccaagacc
gccagccttgagctgtccgagcgccttgaagcccgcggctttgctgccgccgcgctgaac
ggcgacctcagccagcagctgcgtgaacaggtggttgaccgcctcaagcgcggcctgctg
gacattgtggtggcgactgacgttgccgcccgtggtctggacgtagagcgtattacccac
gtactgaactacgacctgccgcacgacagcgaaagctacgtgcaccgcatcggccgtacc
ggccgcgccggtcgtcagggcaccgcgattctgttcgccaccccgcgcgagcgtcgcctg
ctgcacgtgctggaacgcgccaccggccagaagatcgagccgcaagcgctgcccaccgcc
gatgccgtgcgcagtggccgcctgaacaagctggctgcacgcctgaacgacgcccgcgag
cactccaccgccctgcatcagcaactggtcaacgacctgcaggaactcaccagcctggat
gcctccgagctggccgccgcgctgttgagcatcctgccgagcgccaagaccctgctggag
ccggtcgccgacctgcctgcccaggcaccgcgcaaggaccgccagtttgaccgcgacagt
ggtctgacccgctacaaggtccagggcggccgcaagagcggcctgatgcccaaaccgctg
gttgacgtactggtcaaggtgggcggcgtccagcgtcagcagattggccacatcaagctg
ttccccgagcacaccggcgtctacctgccgcagctcgaccagcagaccctcaaccgcctg
gctggcgccgagatcaacggcatcgccctgcagatcaaggcctggccgctgcccgaaggc
gaactgccgccgcgtgatcacgcgccgcgcaagccgcgtcgtgactttgccaagggcaag
ggcaagccgccgcgcaagggctga
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