KEGG   Halopseudomonas maritima: HV822_07690
Entry
HV822_07690       CDS       T08633                                 
Name
(GenBank) ribonuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
harr  Halopseudomonas maritima
Pathway
harr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:harr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    HV822_07690
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:harr03019]
    HV822_07690
Messenger RNA biogenesis [BR:harr03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     HV822_07690
SSDB
Motif
Pfam: RNase_J_b_CASP Lactamase_B Lactamase_B_2 RMMBL Anti-Pycsar_Apyc1 Lactamase_B_6
Other DBs
NCBI-ProteinID: UJJ33016
LinkDB
Position
1677530..1678858
AA seq 442 aa
MRARFDQLHRQPGPWFVALGGAGMFGANFYLYGSAGEWIAVDCGFALNPTPSGRNAVSVP
SLAALERYDITLSAILITHGHEDHIGAIPHLWRALECPIYASPFAARLIRAKLDPGLTWP
RLQEIRPLEPIGIGAFQAEWIPVTHSIPESHAIVLEVAGKRLYHSGDWKLDNHPVVGELT
AQARLQQLGRDGIDVVVGDSTNAPVSGASRSEATVQNGLQDAIRPCRQRVIVTCFASNLA
RLHSLADIAFDCGRYAALLGRSLTHMHSIGRAQGYLRARPGYIGPWELGHLPREQQLWVC
TGSQGEPGAALGRLAAGSHPHLSLEPGDTVIFSSRLIPGNEAALERIKQGLKEQGVELID
DDLQPQVHASGHPPQDDLRQLYGWLKARYLLPVHGELYHQQAHMALGRELGLGGLIPGNG
DLIDLSAQPAKVAELPWGLVEV
NT seq 1329 nt   +upstreamnt  +downstreamnt
atgcgcgcccgcttcgaccaactccaccgccagccaggcccctggtttgtggccttgggc
ggcgcgggtatgttcggcgccaacttctatctgtatggttcggccggcgagtggattgcg
gtagattgcggctttgccctgaacccgacacccagcggtcgcaacgccgtctcggtgccc
agtctggccgcgctggaacgctatgacatcacgctgtcggcgattctcatcacccacggt
cacgaagaccacatcggcgctattccacacctctggcgcgcgctggagtgcccgatctac
gccagcccctttgccgccaggctgattcgcgccaagctagacccgggcctgacctggccg
cgtttgcaggagattcgtccgcttgagcccatcggcatcggcgcgtttcaggccgaatgg
attccggtcacccactcgatccccgagtcccatgccatcgtgctggaggtcgccggcaaa
cgcctgtaccacagcggcgactggaagctggacaaccatccggtggttggcgagctgacc
gcgcaggcacgcctgcagcagctgggacgtgacggcattgacgttgtcgttggcgactcg
accaacgccccggtgtccggcgccagccggtctgaggccaccgtgcaaaacggtctgcag
gatgctatccggccctgtcgccagcgcgttatcgtcacctgttttgccagcaatctggcg
cgcctgcacagcctggcggatatcgccttcgactgcgggcgctatgctgcgctgctgggc
cgcagcctcacccacatgcacagcatcgggcgcgctcagggctacctccgcgcgcgaccc
ggctatatcggcccatgggaactgggccatctgccgcgcgagcagcagctgtgggtgtgc
accggcagtcagggcgaaccgggcgcggcgctgggccggttggccgctggcagccatccg
cacctgagcctggagccgggcgataccgtcatcttctcctcgcgcctgatccccggcaac
gaggcggcgctggagcgcatcaagcagggtctgaaagagcagggcgtcgagctgatcgac
gacgacctgcagccccaggtgcacgcctccggccatcccccgcaggacgacctgcgccag
ctgtacggctggctcaaggcccgctacctgctgccggtccacggcgagctttatcaccag
caggcgcatatggcgctgggccgcgaactgggactgggcggcctgatccccggcaacggc
gacctgatcgacctcagcgcacagccggccaaggtggcagagctgccgtgggggctggta
gaggtttag

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