Halopseudomonas maritima: HV822_15965
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Entry
HV822_15965 CDS
T08633
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
harr
Halopseudomonas maritima
Brite
KEGG Orthology (KO) [BR:
harr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
harr03032
]
HV822_15965 (topA)
03400 DNA repair and recombination proteins [BR:
harr03400
]
HV822_15965 (topA)
Enzymes [BR:
harr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
HV822_15965 (topA)
DNA replication proteins [BR:
harr03032
]
Prokaryotic type
DNA Topoisomerases
HV822_15965 (topA)
DNA repair and recombination proteins [BR:
harr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HV822_15965 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Ribosomal_L10
Motif
Other DBs
NCBI-ProteinID:
UJJ31238
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Position
3459070..3461691
Genome browser
AA seq
873 aa
AA seq
DB search
MGKALVIVESPAKAKTINKYLGNEFVVKSSIGHIRDLPTSGSGKTESKPKGGRKAAASEQ
EKQQKARAQLVKRMGVDPENDWKAHYEILPGKEKVVDELRRLAKDADTVYLATDLDREGE
AIAWHLRESIGGDDSRYKRVVFNEITKKAIQEAFAEPGDLDMNRVNAQQARRFLDRVVGY
MVSPLLWQKIARGLSAGRVQSVAVKLIVDREREIRAFVPEEFWEVHAKLNTPKAESVRFQ
VVKQNGETFRPGNKAEADAALALLKEAAYKVAKREDKPTSSRPNAPFITSTLQQAASTRL
GFSVKKTMMMAQRLYEAGYITYMRTDSTNLSADAIAMARSYIESNFGAPYLPEKPNLYSS
KEGAQEAHEAIRPSDVKLKQTDLKGMERDAERLYELIWRQFVACQMTPAKYLSTNIQVAA
GDFELRAKGRILKFDGYTRVMPQQGKGGEDEVLPEIQVDDVMALQALDPKQHFTKPPARY
AEASLVKELEKRGIGRPSTYASIISTIQDRGYVTLNNRRFYAEKMGDIVTERLNESFPNL
MDYGFTANMEESLDDVAQGEVLWKKVLNDFYSDFSAKLSTASASGDDKGMRANQPTLTDI
ACHECGRPMMIRTASTGVFLGCSGYALPPKERCKATINLVPGNEVAADDDEGESRVLRGK
HRCGLCGTAMDSYLIDERRKLHVCGNNPDCSGFEIEEGQFKIKGYDGPTLECDKCGSEMQ
LKTGRFGKYFGCTNSECKNTRKLLRNGEAAPPKADPVPMPELKCEKVDDVYVLRDGASGL
FLAASQFPKNRETRAPLVKELLPHKSEIDPKYQFLLDAPVADPEGNPTVVRYSRKTKEQY
VQTEVEGKPTGWRAFHDGKKWSVDDSRSKKAKR
NT seq
2622 nt
NT seq
+upstream
nt +downstream
nt
atgggaaaagcactggtcattgtggagtcgccagccaaggccaagacaatcaacaagtac
ctcggcaacgagtttgtggtgaagtcgagtatcggccatattcgcgacctgcccaccagc
ggcagcggcaagaccgaaagcaaacccaagggcgggcgtaaggctgctgccagcgagcaa
gagaagcagcagaaggcgcgtgcccagttggtcaaacgcatgggcgtcgatccagaaaac
gactggaaagcccattacgagatcctgcccggcaaagaaaaggtggtggacgagttgcgc
cgcctggccaaggacgccgacaccgtctatctcgcgacggacttggaccgcgaaggggag
gccattgcctggcacctgcgcgagagtattggcggtgatgattcccgctacaagcgcgtg
gtgttcaacgaaattaccaaaaaggcgattcaggaagcctttgccgagcctggcgatctg
gacatgaatcgggtcaacgcgcagcaggcgcggcgttttctcgatcgcgtggttggctac
atggtgtcgccgctgctatggcagaagatcgcccgtggcctgtctgccggccgggtgcag
tcggtggctgtaaagctgattgtcgatcgcgagcgcgagattcgtgcgttcgtgcccgaa
gagttctgggaagttcacgccaagctgaatacgcccaaagctgagagtgtgcgctttcag
gtggtcaagcagaacggcgagaccttccgcccaggcaacaaggccgaggcggatgccgcc
ctggcgctgctgaaagaagcggcctacaaggttgccaagcgtgaggacaaaccgaccagc
tcgcgccccaatgcgccctttattacctccacgctgcagcaggctgcgagtacgcgcctg
ggcttcagcgtaaagaaaaccatgatgatggcccagcgtctgtatgaagcgggttacatc
acctatatgcgtaccgactcgaccaacctgtcggcggatgccattgccatggcgcgcagc
tatatcgagagcaacttcggcgcgccttacctgccggaaaagcccaatctgtacagcagc
aaggaaggcgcgcaagaggcccacgaagctattcgcccctcggacgtgaagctcaagcag
accgatctcaaaggtatggagcgtgacgccgagcgcctgtacgagctgatctggcgtcag
tttgtggcctgtcagatgaccccggccaagtacctgtccaccaatattcaggtggctgcc
ggcgacttcgagctgcgtgccaagggtcgcatcctcaagtttgacggttacacccgtgtt
atgccgcagcagggcaagggcggtgaggacgaggtgctgcccgagattcaggttgatgac
gtcatggcgctgcaggccctggaccccaaacagcactttaccaagccgccggcgcggtac
gccgaggcgagtctggtaaaagagctggagaagcgcggtatcggccgtccttcgacctat
gcatcaatcatttccaccattcaggatcgtgggtacgtcacgctcaataatcgtcgcttt
tacgccgaaaagatgggcgacatcgtgaccgagcgccttaacgagagcttcccgaacctg
atggactatggctttaccgccaacatggaagagtcgctggacgacgttgctcagggcgaa
gtgctctggaagaaggtgctgaatgacttctacagcgatttcagtgccaagctcagcacc
gcctctgcgtccggcgacgacaaggggatgcgcgccaatcagccgacgctaaccgatatt
gcctgccatgaatgtggccggccgatgatgattcgtacggcgtccaccggcgtatttctc
ggctgttctggttacgcgctgccacccaaagagcgctgcaaggccaccatcaacctggtg
ccgggtaacgaagtggccgctgatgatgacgagggcgagtcgcgcgtattgcgcggtaag
catcgttgcgggctgtgtggcacggcgatggacagctacctgatcgatgagcgtcgcaag
ctgcatgtttgcggtaataacccggactgttccggctttgagatcgaagagggtcagttc
aagatcaagggctacgatggcccgacgctggagtgcgacaagtgcggcagtgaaatgcag
ctgaagacgggccgcttcggcaagtatttcggctgcaccaacagcgagtgcaagaacacc
cgcaaactgctgcgcaatggcgaggcagcgccgcccaaggccgacccggtgcccatgccg
gaactcaagtgcgagaaggtggatgacgtctacgtcctgcgtgatggcgcttcagggctg
ttcctagcggcaagccagttcccgaaaaaccgggaaacccgcgcgccgctggttaaggag
ttgctgccacacaagagcgaaatcgatcccaagtaccagtttctgctggatgcgccggtc
gctgacccggaaggtaacccgaccgtggtgcgctatagtcgcaagaccaaggagcagtac
gtacagacggaagttgaaggtaagccgactggctggcgtgcattccacgatggcaagaag
tggtcggtggatgacagtcgcagcaagaaagccaagcgttga
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