Halomonas sp. RT37: NFG58_18970
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Entry
NFG58_18970 CDS
T11872
Symbol
rapA
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
hart Halomonas sp. RT37
Brite
KEGG Orthology (KO) [BR:
hart00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hart03021
]
NFG58_18970 (rapA)
Transcription machinery [BR:
hart03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
NFG58_18970 (rapA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RapA_C
Tudor_1_RapA
Tudor_RapA
SNF2-rel_dom
Helicase_C
ResIII
DEAD
NAT10_TcmA_helicase
DUF6098
Motif
Other DBs
NCBI-ProteinID:
XBO70664
LinkDB
All DBs
Position
4366801..4369740
Genome browser
AA seq
979 aa
AA seq
DB search
MSDFSPGQRWISDGEAELGLGTILNCDARSVTVLFGASQETRTYSTRLAPLTRVAFGSGD
RIQSAEGWQMTVDDTKEIDGLIVYIGEDDKGELCELPEARLADSMQFDQARDRLLTGQVD
RNDWFDLRFRTLHHYHRIEQNPALGLAGPRIDLIPHQLYIADEVSSRQAPRVLLADEVGL
GKTIEAGLILHRLLLTGRVERALILVPASLTHQWLVELLRRFSLSVTLLDEQQSQAHGDT
NPFEAGQLVLASQDWLFANTHRQQQAEACEWDLLIVDEAHHLEWSEDEVGPGYACVERLS
GATEGVLLLTATPEQMGLASHFARLRLLDRDRYSDLEAFRAEEQGYVAVAEAIDALGDVD
GPLDAGARDTIGAVADDGDSQALLATLSNPECSLEQRQQASAQLRDQLLDRHGTGRVMFR
NSRRHVGGFPERRLHVDKLELPSSYRRVLRRLARDEDYLDELLIETGLDHPEVMVYLDGM
YSALTEDPLNAEPWWQFDPRVTWLLERLTEMGDDKVLVIAHDRETAQGLSDGLRVLGGVQ
APVFHEDLSLVERDRAAAAFADDEDGCQVLVCSEIGSEGRNFQFCRHLVMFDLPLHPDQL
EQRIGRLDRIGQRHAIEIHVPVFEGSPGEKLLRWYQEGMDAFSAPHGIGNDLFDAFGDDL
AESLLDDEALEEVIGETRALFDAKLAERDAGRNRLLELNACRPERVESVKQGIVELDEDR
ALPRYLDQALDIFGVDSRELGNDLTLLSPGSHMLDGLPGLVKGEEGFTVTTSRSRALARD
DVQRLSWEHPLLREMMGRILDGNMGNTALALLKHPAIPAGRLMAELVFRTHCPAPKRLHL
NRFLPPTAVRVLLDESGANLTDKVSFTGLSKNLKKVKKAVARDLIKSRHDQLRDLLDSAE
AEAQRELPTIVEAAQVRMRQTLDNELTRLEALAQRNPSVREDEITALRDERQALDQAIEG
TRLRLDAVRVIVTIDDDSA
NT seq
2940 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacttctctcccggccagcgctggatcagcgacggcgaggccgaactcggcctg
ggcactatcctgaattgcgacgcgcgcagcgtcaccgtgctcttcggcgccagccaggaa
acccgcacctacagtacccgtcttgccccgttgacccgagtcgccttcggcagtggtgat
cgcatccagtccgccgagggctggcagatgacggtggacgacaccaaggaaatcgatggc
ctgatcgtctatatcggcgaagacgacaagggcgagctgtgcgaattgccggaggcccgg
ctggccgacagcatgcagttcgaccaggcccgagatcgtctgctgaccggccaggtcgat
cgcaacgactggttcgacctgcgctttcgcaccctgcatcactaccatcgcatcgagcag
aacccggcgctgggtctggccggcccacgcatcgatctgataccccatcagctgtacatc
gccgacgaggtctcctcgcgtcaggcgcctcgcgtgctgctggccgatgaagtcggcctc
ggcaagaccatagaagccggactgatcctgcatcgcctgctgctgaccgggcgggtcgag
cgggcgctgatcctggtgccggcgagcctgactcaccagtggctggtggaattgctgcga
cgcttctcgctgtcggtgaccctgctcgacgaacagcagagccaggcccacggtgacacc
aatcccttcgaggccggccagctggtgctggcaagccaggactggctgttcgccaacacc
caccgccagcagcaggccgaagcctgcgagtgggacctgctgatcgtcgacgaggcccac
cacctggagtggagcgaggacgaggtcggccccggttacgcctgcgtcgagcgcctgtcc
ggcgccaccgagggcgtgctgctgctgaccgcgacgccggaacagatggggctggccagc
cactttgccaggctgcgcctgctcgatcgcgatcgctactcggacctggaggccttccgc
gccgaagagcagggctatgtggcggtggccgaggccatcgacgccctgggcgatgtcgac
gggccgctggatgccggcgcccgggacaccatcggcgctgtcgccgacgacggcgacagc
caggcgctgctggcgaccctgtccaaccccgaatgcagcctggaacagcgccagcaggcc
agcgcccagctgcgagaccagctgctcgaccgccacggcaccggccgggtgatgttccgc
aacagccgtcgccacgtcggcggcttccctgaacgtcgcctgcacgtcgacaagctggag
ctgccgtcgtcctatcgccgagtgctgcgtcgcctggcgcgggacgaggactacctcgac
gagctgctgatcgagaccggcctcgaccaccccgaggtgatggtctatctggacggcatg
tacagcgccctgaccgaggatccgctcaacgccgaaccctggtggcagttcgacccccgg
gtgacctggctgctcgaacggctgaccgagatgggcgacgacaaggtcctggtgatcgcc
cacgaccgcgagaccgcccaggggctgtccgacggcctgcgcgtgctcggcggggtacag
gcgccggtgttccacgaggacctgtcgctggtcgagcgcgaccgtgccgccgccgccttc
gccgatgacgaggacggctgccaggtgctggtgtgttccgagatcggctccgaaggccgc
aacttccagttctgtcgtcatctggtgatgttcgacctgcctctgcacccggatcagctt
gagcagcgcatcggccgtctcgaccgcatcggccagcgccacgccatcgagatccatgtg
ccggtgttcgaaggcagccccggcgagaaactgctgcgctggtatcaggaggggatggac
gccttcagtgcgccgcacggtatcggcaatgacctgttcgacgccttcggcgacgacctg
gccgagagcctgctcgacgacgaggctctggaagaagtcatcggtgagacccgcgcgctg
ttcgacgccaagctggccgaacgcgacgccggtcgcaatcgcctgctggagctcaacgcc
tgccgtcccgagcgggtcgagtcggtcaaacaggggatcgtcgaactcgacgaggaccgc
gccctgccacgctacctcgaccaggcgctggacatcttcggcgtcgacagtcgcgaactt
ggcaacgacctgaccctgctgtcaccgggctcgcacatgctcgacggcctgccagggctg
gtgaagggcgaggaaggcttcaccgtgaccacctcgcgctcccgcgcgctggcccgggac
gacgtccagcggctgtcctgggaacacccgctgctgcgcgagatgatgggccgcatcctc
gacggcaacatgggcaacaccgcccttgccctgctcaagcatccggcgatccctgccggc
cggctgatggcggagctggtgttccgcacccactgtccggcaccgaagcgcctgcacctc
aatcgcttcctgccgcccaccgcggtgcgggtgctgctcgacgagtccggcgccaacctc
accgacaaggtgtctttcaccggtctttcgaagaacctcaagaaggtcaagaaggcggtg
gcgcgggacctgatcaagagtcgtcacgaccagctgcgcgacctgctcgacagcgccgag
gccgaggcccagcgagagctgccgacgatcgtcgaggccgcccaggtgcgcatgcgccag
acgctggacaacgagctgacccgactcgaggccctggcacagcgcaacccgtcggtacgc
gaggacgagatcaccgccctgcgcgacgagcgccaggcgctggaccaggccatcgaaggc
acccgcctgcgcctggacgccgtgcgtgtgatcgtgaccatcgacgacgacagcgcctaa
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