Halanaerobium hydrogeniformans: Halsa_0482
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Entry
Halsa_0482 CDS
T01349
Name
(GenBank) excinuclease ABC, A subunit
KO
K03701
excinuclease ABC subunit A
Organism
has
Halanaerobium hydrogeniformans
Pathway
has03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
has00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Halsa_0482
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
has03400
]
Halsa_0482
DNA repair and recombination proteins [BR:
has03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Halsa_0482
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Halsa_0482
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
AAA_16
AAA_29
RsgA_GTPase
AAA_22
AAA_23
nSTAND1
AAA_18
AAA_33
APS_kinase
ATPase_2
nSTAND3
Viral_helicase1
cobW
NB-ARC
RNA12
ExoX-like_C
DnaJ_CXXCXGXG
AAA_21
NTPase_1
BCA_ABC_TP_C
Motif
Other DBs
NCBI-ProteinID:
ADQ13955
UniProt:
E4RPS1
LinkDB
All DBs
Position
560746..563556
Genome browser
AA seq
936 aa
AA seq
DB search
MAKDRIIVKGAEEHNLKKIDLEIPRDKLIVITGLSGSGKSSLAFDTIYAEGQRRYVESLS
AYARQFLGQMEKPRVEYIEGLSPAISIDQKTTSRNPRSTVGTVTEIYDYLRLLYARVGIP
HCPECGQEINSQTVDEIVDQVLELPERTKIMVMAPIVRGRKGEHERTFLQAVRDGFVRAR
IDGEIMLLEDAQKLDKNIKHDIEVIVDRLIVKSGIRERLADSVETALEYADGLVMINEVD
GETTTYSEKFACVDCGISLEEKSPRMFSFNSPYGACENCGGLGVKKEFDPELILDQDKSI
ADGGIIPWKNSSSRYYPALLEALAEKHDFSRQTPLKKLDEDLIKLLLYGSKEKITFPYTN
RYGRTRDHTTKFKGVIGYLQKRMSDSDSPGTHKRMERYMNEIPCQVCGGQRLKPEVLAVT
IGGLSIAEFTSFSIKDAYDFLEEVDFDERRAYIGKEILKEVKARLRFLLDVGLEYLTLDR
SAGTLSGGEAQRIRLATQIGSGLVGVLYILDEPSIGLHQRDNNRLINTLEHIRDQGNTVI
VVEHDEETIRSADHIIDIGPGAGKHGGEIVAEGNVDDIINEKRSLTGQYLNGSKKIEIPE
DRYQPNGNWLTIEGARQHNLKNIDVDIPLGTFTCVTGVSGSGKSTLVNNVLKRRLMQEIY
DSTLHPGDHDGIKGLEQVDKVINIDQSPIGRTPRSNPVTYTKVFNYIRDVFASTPEAKQR
GYEIGRFSFNVKGGRCEACKGQGEEQIEMHFLPDVYVPCEVCDGKRYNRETLEIKYKGKS
IADVLDMNVEEALEFFENIETIRRRLQTLYDVGLGYIRLGQPATTLSGGEAQRVKIAKEL
GKRSTGQTIYLLDEPTTGLHFDDVKKLLSVLHRLREDGNTVIVIEHNLDVIKSADYIIDL
GPEGGEKGGQLIAKGSPEDVANNESSYTGRFLKDIL
NT seq
2811 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaagatcgaataatcgttaagggtgctgaggagcataaccttaaaaaaatagat
ttagaaattccgcgtgataaattaatagttataacaggcttaagtggttctggtaaatct
tcccttgcctttgatacaatttatgcagagggacagaggcgctatgttgaatcactatct
gcctatgcaaggcagtttttaggtcagatggaaaaacctcgggtggaatatatcgagggt
ctttctcctgcaatttctatcgaccagaaaaccaccagtcgtaatccccgttcaactgtg
ggaaccgttaccgagatttatgattatctgcgtctgctttatgctagagttgggattcct
cactgtcctgagtgtggtcaggagataaactctcaaactgttgatgaaattgtagatcag
gtcttagaacttccggaaagaacaaagattatggtaatggctccaattgtaagggggcgc
aagggtgaacacgagagaacctttctccaggcggtaagagatggttttgtcagggccaga
atcgatggcgaaatcatgctgctcgaagatgcccaaaaactggacaaaaatattaagcat
gatatagaggttatagttgatcgtttgatagttaaatcagggatcagagaaagactggct
gattcggttgagaccgctttagaatatgctgatggcctggttatgatcaatgaggttgat
ggtgaaacaacaacctacagtgaaaagtttgcctgtgttgattgtgggatcagtttagaa
gaaaaatccccaagaatgttttcttttaacagtccttatggggcctgtgagaattgtggt
ggtctgggggttaaaaaagaatttgacccggaattgatcctggatcaggacaaatcaatt
gctgatggagggataatcccctggaaaaactcttccagccgctattatccagccctttta
gaggctttagctgaaaaacatgattttagccgtcagactccacttaaaaaactggatgaa
gatttaattaaactgctcctttatggcagcaaagaaaagatcaccttcccttataccaat
cgttatggtaggaccagggaccatacaactaaatttaagggggtaatcggctatttgcaa
aaacggatgagtgattctgattcacccggaacccataaacggatggaaagatatatgaac
gaaataccctgtcaggtttgtgggggccagcgtttaaagccggaggtactcgcagtaaca
atcggtggactttctatagcagaatttacttctttttctattaaagatgcctatgatttt
ttagaagaggtagattttgatgaaagaagggcttatataggcaaagagatcctcaaagaa
gtcaaggccagactgcgttttttacttgatgttggtctggaatatttaacccttgaccgt
tctgccggaactctttctggaggagaggcccagcgaatcaggctggcaacccagataggt
tcaggtctagtcggggtattatatatacttgatgagccgagtatcggccttcatcaaaga
gataataatcgtttgatcaacaccttagagcatattcgtgatcaaggtaacacagtaata
gtggttgaacatgatgaagaaactattcgttcagctgatcatattattgatattggacct
ggagcaggaaaacacggaggagaaattgttgctgaaggcaatgttgatgatattatcaat
gaaaaaaggtctttaacaggtcagtatttaaatggcagtaagaagatcgagattcctgaa
gatagatatcaaccgaatggtaattggttgactattgaaggggccaggcagcacaatctt
aaaaatatagatgttgatattcctctgggaacttttacctgtgttacaggagtttcaggt
tcaggtaaaagcactctggtcaataatgttttaaaaagaagattgatgcaagaaatctat
gattctacccttcatcccggagatcacgatgggataaaaggtttagaacaggtagataag
gtgatcaatattgatcagtcaccaatcggaagaacaccgcgatctaatccggtaacctat
accaaggtttttaactatattagagatgtatttgccagtactccagaagccaaacagcgt
ggttatgaaattggccgtttcagctttaatgttaagggaggccgctgtgaagcctgcaaa
ggccagggagaagaacagatagaaatgcactttttgcctgatgtttatgttccctgtgag
gtctgtgatggcaaaagatataatagggagaccttagagataaaatacaagggtaaaagt
atagctgatgttttggatatgaatgtagaggaagctcttgagttttttgagaatattgaa
accatcaggcgaagactgcagactctttatgatgttggcctgggttatattagattgggc
cagccggcaacaacactttccggtggagaagctcaacgggttaaaattgctaaagagttg
ggtaaaagaagtaccggtcagacaatttatttattagatgagccgacaaccggactccat
tttgatgatgtaaaaaaacttctaagtgtacttcaccgtttaagagaagatggtaataca
gtcatcgtaatcgagcataatttagatgtgataaaatctgctgattatattattgattta
ggaccagaaggtggagaaaaaggtggacagttaattgccaaaggtagcccggaagatgtt
gcaaataatgagagctcatatacaggtaggtttttaaaagatatactttag
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