Halanaerobium hydrogeniformans: Halsa_1929
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Entry
Halsa_1929 CDS
T01349
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
has
Halanaerobium hydrogeniformans
Pathway
has03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
has00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Halsa_1929
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
has03021
]
Halsa_1929
03400 DNA repair and recombination proteins [BR:
has03400
]
Halsa_1929
Enzymes [BR:
has01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Halsa_1929
Transcription machinery [BR:
has03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Halsa_1929
DNA repair and recombination proteins [BR:
has03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Halsa_1929
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
NleE
Motif
Other DBs
NCBI-ProteinID:
ADQ15347
UniProt:
E4RJC7
LinkDB
All DBs
Position
complement(2121410..2124664)
Genome browser
AA seq
1084 aa
AA seq
DB search
MSTVRERRSFSKIEDAMDLPDLIYTQLNSYQWFLEEGLKEVFAEISPIEDFSENLVLEFV
DYYLEDPEYTVQECRDRDDTYSASLQVKVRLINKETGEVKEQEVFMGDFPLMTDKATFII
NGAERVVVNQLVRSSGVYFSDERTKDGRRLITGSIIPNRGAWIEFEYDKKRIISVRVDRT
RKLPSTVLLRALGYGTDSEIIDEFGDSEVIHDTLERDSTESKEEALIELYKRLRPGEPPT
VESATNLLDSLFFDHKRYDMAAVGRYKLNKKLDLEVDKDRKYLHIDDIVETVRYMVNLIY
HNDDAYIDDIDHLGNRRLKTVGELLQNQFRIGLSRMERVVRERMTIQDVDVVTPQALINT
RPVVASIQEFFGSSQLSQFMDQTNPMSELTHKRRLSALGPGGLSRERAGFDVRDVHHSHY
GRICPIETPEGPNIGLIGTMGTYAKTNEFGFLMTPYRRVVDNQVTENIDYLTADEEDKYI
IAQANSELDEENKFVSEFVVARKRGDILEVHPDDIDYMDVSTKQLVGVSAAMIPFLENDD
ANRALMGANMQRQAVPLMITDAPIVATGMEYKAAKDSGAVVIAEKGGEVVNVTSNKIMIK
NDEGLIDSYKLMKYKRSNQGSCMNQKPIVEKGDIVDKNDIIADGPSTEKGEMALGRNTLI
AFMPWEGYNYEDAILISENLVKEDSFTTIHIEEHEAEARDTKLGPEEITRDIPNVGENAL
KNLDDRGIIRVGAEVEEGDILVGKVTPKGETELSAEERLLRAIFGEKAREVRDTSLKVPH
GEEGKVVDVKVFSREQGDDLKPGVNRLVRVYVATKRKISVGDKLAGRHGNKGVISRILPE
EDMPFLPNGEPVEIVLNPLGVPSRMNIGQVLETHLGMAAKELGIYTETPVFNGATEIEVE
DVLEEAGLARDGKTVLYDGRTGERFEGRVTVGLMYILKLHHLVDDKLHARSTGPYSLVTQ
QPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVVGRVKAYEAIVKGENVPE
PGIPESFKVLIKEMQSLGLDARIFTSDEEELQVAENEDEMMETAQKLGLDTDLKLSRDND
DNDE
NT seq
3255 nt
NT seq
+upstream
nt +downstream
nt
atgtcaacggtaagggaaagacgtagttttagtaagattgaagacgcgatggatttgcca
gacctaatttatacacagttaaactcttaccagtggtttctggaagaagggttaaaagaa
gtttttgcagaaatttctccaatagaggatttttctgagaatctggtattagaatttgtt
gattattatttagaggatcccgagtacacggtgcaagaatgtcgggatagagatgatact
tactctgcttctttacaggttaaagttagattaataaataaagaaactggagaagtaaaa
gaacaagaagtttttatgggagatttccctttaatgactgacaaagcaacatttatcata
aatggagctgaaagagttgtagtaaatcagttagttagatcatctggtgtttattttagt
gatgagagaactaaagatggacgtcgattaataacaggtagtattatacctaatcgaggt
gcctggatagagtttgaatatgataaaaaaagaattatatctgtacgggttgatagaaca
agaaaacttccttcaacagtattattgagagcacttggttatggaactgattcagaaatc
attgatgaatttggtgattctgaagtaattcatgatactttagagagagatagtacagag
tctaaggaagaagctttaatagaattatataaacgacttcgtcctggagaaccgccaaca
gttgaaagtgctaccaatcttttggattcattattttttgatcacaaaagatatgatatg
gctgctgtaggtcgttataaattaaacaaaaaattagatttagaagttgataaagataga
aaatatttgcatatagatgatattgtagaaactgttagatatatggtcaatttaatttat
cataatgatgatgcttatatagatgatattgatcatttaggtaatagacggttaaaaaca
gtaggagagctactgcaaaatcagtttagaattggactttccaggatggaaagagtagta
agggaaagaatgactattcaggatgtggatgtagtaacaccacaggcattgattaatact
cgtcctgttgtagcttctatccaggaattttttggaagcagtcagctttcacaatttatg
gatcagaccaatccgatgtctgaattaactcataaaagaagattaagtgctttaggacct
ggtggtttaagtagagaacgtgctggttttgatgtacgtgatgttcaccattctcattat
ggaaggatttgtccgattgaaacacctgagggtccaaacattggccttattggtacaatg
ggaacttatgctaaaacaaatgagtttggttttttaatgactccatatcggagagttgtg
gataatcaggttacagaaaatattgattatttaactgctgatgaagaagataagtacatt
atagctcaggcaaattctgaacttgatgaagaaaataaatttgttagtgagtttgttgtt
gctcgtaaaagaggagatattttagaagttcatcctgatgatattgattatatggatgtt
tctaccaaacagttggtaggagtttctgctgctatgattccttttttagagaatgatgat
gcaaacagagctctcatgggagctaatatgcagcgtcaggcagtaccacttatgattaca
gatgccccaattgttgctactggtatggaatataaagcagcaaaggattcaggagcagta
gtaattgctgaaaaaggtggagaagttgttaatgtaacgtctaataaaattatgattaaa
aatgatgaaggtttaatagatagttataaattaatgaaatataagcgttctaatcaggga
agttgtatgaaccagaagcctatagttgaaaaaggtgatattgttgataaaaatgatatt
attgctgatggtccttcaactgaaaaaggcgagatggctcttggcagaaatactttaatc
gcttttatgccctgggaaggctataattatgaggatgctattttaataagtgaaaaccta
gtaaaagaggattcatttacaactattcatattgaagaacatgaagctgaagccagagac
acaaaacttggaccggaagaaattactcgtgatattcccaatgtcggtgaaaatgcttta
aaaaatcttgacgatagaggaataattagagttggagccgaggttgaagaaggtgatatt
ttagttggtaaagtaactccaaagggagaaactgaattatcagctgaagaaagacttcta
agagcaatttttggcgaaaaagccagagaagtaagagatacttctcttaaagttcctcat
ggagaagagggtaaagttgtagatgtcaaagtcttttctcgtgaacagggtgatgattta
aaacctggtgtaaatagattagtaagggtttatgttgctaccaaacgtaaaatatctgtt
ggtgacaaacttgctggccggcatggaaacaagggtgttatttctcgaatattacctgaa
gaagatatgccgtttttaccaaatggtgagcctgtagaaatagtattaaatccattagga
gtaccttcacggatgaatattggccaggtacttgaaactcatcttggtatggcagccaaa
gaacttggaatttatactgagacacctgtatttaatggtgctactgagatagaggttgaa
gatgttttagaagaggctggtttagctagagatggtaaaacagtactttatgatggtaga
actggagaaagatttgaaggcagagtaacagttgggcttatgtatatacttaaattacat
cacctggtggacgacaagcttcatgcgcgttcgaccggaccttattcccttgttacacag
cagccactaggaggtaaagctcaatttggtggtcagcgctttggtgagatggaagtttgg
gcacttgaagcttatggtgctgcttacaccctccaggaaatgttgactgttaaatcagat
gatgttgtgggaagggtaaaagcctatgaagcaatagttaaaggagaaaatgtacctgaa
ccaggcattccagaatcatttaaggttctgattaaagagatgcagagtttaggcttagat
gccagaatctttacttctgatgaagaagaacttcaggttgcagaaaatgaagatgaaatg
atggagactgcacaaaaacttggtcttgatactgatttaaaacttagtcgtgataatgat
gataatgacgaataa
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