Halomonas sp. SH5A2: HXW73_00780
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Entry
HXW73_00780 CDS
T09591
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
hash
Halomonas sp. SH5A2
Pathway
hash03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hash00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HXW73_00780 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hash03021
]
HXW73_00780 (rpoB)
03400 DNA repair and recombination proteins [BR:
hash03400
]
HXW73_00780 (rpoB)
Enzymes [BR:
hash01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HXW73_00780 (rpoB)
Transcription machinery [BR:
hash03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HXW73_00780 (rpoB)
DNA repair and recombination proteins [BR:
hash03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HXW73_00780 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
QNI01590
LinkDB
All DBs
Position
161088..165164
Genome browser
AA seq
1358 aa
AA seq
DB search
MAYSYTEKKRIRKDFGKLPQVMDVPYLLAIQLDSYYDFLQQDRSPDERHEIGLHAAFKSV
FPIESFSGNAALEYVSYRFGTPAFDVKECQLRGVTYSAPLRVKVRLIIYDRDSSNKAIKD
IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKSHSSGKLLYSARV
IPYRGSWLDFEFDPKDNVFVRIDRRRKLPATVLMRALGMSAEEILGEFFETSIFHVEKSG
FSVELVPSRLRGETATFDIKDGNGETIVEEGRRITQKHIRQLEKAGLDRLDVPMEYLFGK
TLAKDQVDSKTGELICPCNTEITPEILEAMAKGGIKRIETLYTNDLDCGSFISDTLKLDT
TGSQLEALVEIYRMMRPGEPPTKEAAETLFHNLFFTEDRYDLSGVGRMKFNRRLRGDGDT
GSGILDRKDILDVLRELINIRNGFGDVDDIDHLGNRRIRCVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRVSALGP
GGLTRERAGFEVRDVHATHYGRLCPIETPEGPNIGLINSLATYSHTNSYGFLETPYRKVV
DRQLTDDIVHLSAIEEGDFVIAQASAAVDESGKLSDDLVQARHKGETTFMRPEQVTLMDV
SPRQVVSVAAALIPFLEHDDANRALMGSNMQRQAVPTLRAEKPLVGTGMERFVARDSGVC
AVARRGGVIDSVDARRVVVRVNEDEIIGGEAGVDIYNLTKYTRSNQNTCMNQRPIVRPGD
DVARGDILADGPSVDMGDLALGQNMRIAFMPWNGYNFEDSILLSERAAQEDRFTTIHIQE
LTSVSRDTKLGPEEITADIPNVGESALGKLDEAGVVYIGAEVGPGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRAPTGMKGTVIDVQVFTRDGVEKDSRALAIEQMQLDE
VRKDLQETYRIAEDATFVRLKRTLEGQVVNGGPNLKKGDTLDAAYLDELPRQQWFKLRMQ
DESVNELLAQADEQLENRRKEMDERFEDKKRKLTQGDDLAPGVLKIVKVYMAVKRRIQPG
DKMAGRHGNKGVISAIMPVEDMPFDDQGEPVDVVLNPLGVPSRMNVGQILETHLGMAARG
LGVKIEAMLRDAREQQVAEIRDFLGQVYNTPGTRVEDIDSLSDDEVIALAKNLKAGVPMA
TPVFDGAQEHEIKHLLKLADIPESGQMTLYDGRSGDAFDRPVTVGYMYMLKLNHLVDDKM
HARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVEGRTK
MYKNIVDGDHTMQAGMPESFNVLVKEIRSLGIDIELES
NT seq
4077 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatatactgagaaaaaacgcatccgcaaggatttcggcaaactgccacaa
gtgatggatgtgccttacttgctggccatccagcttgattcctattacgacttcctccag
caagatcgttcgcccgacgagcggcacgagatcggtctgcacgcggcgttcaagtccgtg
tttccgattgagagcttctccggtaatgcggcgcttgagtatgtcagctaccggttcggc
acgccggcgttcgatgttaaggagtgccagctgcgcggagtcacgtattctgcgccgctg
cgcgtcaaggttcgcttgatcatttatgatcgcgattcctcgaataaagcaatcaaagat
atcaaagagcaagaagtctacatgggggagatccccctgatgacggagaacggtaccttt
gtgatcaacggtaccgagcgggtcattgtgtcccagctccaccgctcacccggtgttttc
ttcgatcatgacaaaggtaagagccactcatccggcaagctgctctattcagcgcgggtg
attccttaccgtggttcctggctggacttcgagttcgatcccaaagacaacgtcttcgtt
cgtattgaccgtcgccgtaaattgccggctacggtattgatgcgtgcgctgggcatgagt
gccgaagagattctcggcgaattctttgaaaccagcatcttccacgttgaaaagtcaggc
ttttccgtggagctggtgccgtcgcgtctgcgtggtgaaaccgccacctttgacatcaag
gacggcaacggagagaccatcgttgaagaaggtcgccggattacccaaaagcacatccgc
cagctcgaaaaagccggtcttgatcgcctggatgtgccgatggagtacctgttcggtaaa
accctggccaaagaccaggtcgacagcaagactggcgagctgatctgcccatgcaatact
gaaatcacgccagagattctggaagccatggccaagggcggtatcaagcggattgaaacg
ctgtataccaacgatctggactgcggttctttcatctcagacacgctgaagctcgatacc
accgggtcgcagctggaagcgctggtggaaatctaccgcatgatgcgccccggcgagccg
cctaccaaggaagctgccgagacgctgttccacaatctgttcttcactgaagaccgttac
gacctttcgggcgtgggccgcatgaagttcaatcgccgcttacgcggtgatggggatacc
ggctccggcatattggaccgtaaagatatcctcgatgtcctccgcgagctgatcaatatc
cgtaacggctttggcgacgttgacgatatcgaccacttgggcaaccgccgtattcgctgc
gttggtgaaatggccgagaaccagttccgtgtcggcctggtgcgtgttgagcgcgcggtg
aaagagcgcctttccatggcggaaagcgaaggcctgatgccgcaagacctgatcaacgcc
aagccagtggcagcggcggtgaaagagttctttggttcctcgcagctttctcagttcatg
gaccagaacaacccgctttccgaggtgactcacaagcgccgtgtttctgctctcggcccg
ggtggtttgacccgtgagcgcgctggcttcgaagtacgtgacgtacacgccacgcactac
ggtcgtctatgcccgatcgaaacgccggaaggcccgaacatcggtctgatcaactcgctg
gccacctacagccacaccaacagctacggtttcctggaaacgccttaccgtaaggtcgtg
gatcgccagttgaccgacgacatcgttcacctctcggcaatcgaagagggtgacttcgtc
atcgctcaggcatctgccgccgtggatgaatccggcaagctgagtgacgatctggtacag
gcgcgtcacaagggcgaaaccaccttcatgcgccctgagcaggtcacgctgatggatgtg
tcgccgcgccaggtggtatcggtggcagcagcattgatcccgttccttgagcacgacgat
gctaaccgtgccttgatgggctccaacatgcagcgtcaggcggtgcccacgctgcgtgcc
gagaagccgctggtgggtacgggcatggaacgcttcgtagcgcgtgactcgggtgtctgt
gctgttgcccgtcgtggcggggtgatcgattccgtcgatgcgcgtcgtgtggtggtaagg
gtcaatgaggacgagatcatcggcggcgaagccggggtcgatatctacaacctgaccaag
tacacccgttcgaaccagaacacctgtatgaaccagcgccccatcgtgcggcctggtgac
gacgtggcgcgtggcgatatcctcgccgatggcccgtcggtggacatgggcgatctggcg
ctgggtcagaacatgcgcatcgcctttatgccctggaacggctacaacttcgaggactcc
atcctgctttccgagcgggcggcccaggaagaccgtttcaccaccattcacattcaggaa
ctgaccagcgtgtcgcgtgacaccaagttggggccggaagagattaccgcggatatcccc
aacgtcggtgaatcggcgcttggcaagctggacgaggcgggtgtcgtttacatcggtgcc
gaagtcggtccgggggacatcctggtcggtaaggtaacgcccaagggcgaaacccagctg
acgccggaagaaaagctgctacgtgccatcttcggcgagaaagcatctgacgtaaaagat
acctcgctgcgtgcccccaccggcatgaaaggcacggtcatcgacgttcaggtgtttact
cgtgacggcgtcgagaaagactcccgtgcgcttgccatcgagcaaatgcagctggatgag
gtgcgtaaggatctgcaggaaacttaccgtatcgctgaagatgcgacgttcgtgcgtctc
aagcggaccctggaaggtcaggtagttaacggcggcccgaacctcaagaaaggcgatacg
cttgatgcagcgtacctggacgagttgccgcgtcagcagtggttcaagctgcgcatgcag
gatgaaagcgttaacgagctgctggcccaggccgatgagcagctggaaaaccgccgtaaa
gaaatggacgagcgctttgaagacaagaagcgcaagctgacccagggcgatgatctcgca
ccgggcgtgctcaaaatcgtcaaggtttacatggctgtgaagcgccgcattcagccgggc
gacaagatggctggccgccacggtaacaagggtgttatctcggcgatcatgcccgtcgaa
gacatgccgttcgacgatcaaggcgagccggttgacgtggtgctgaaccccttgggtgtc
ccgtcgcggatgaacgtgggccagattctcgaaacccacctgggcatggccgcgcgtggt
ctaggcgtcaagattgaagccatgctgcgcgacgcacgtgaacagcaagtggcagagatt
cgcgacttcctggggcaggtatacaacacgccaggcacgcgggtcgaagacatcgattcg
ctgagtgatgacgaagtcattgcgctggcgaaaaatcttaaagcgggtgtgcccatggca
acgccggtgtttgacggtgctcaagagcacgaaatcaagcatctgctcaagctggcggac
attcccgagtcgggtcagatgacattgtacgacggtcgttccggggatgcgtttgaccgc
cctgttaccgttggctacatgtacatgctcaagctgaaccacttggtcgacgataagatg
cacgcgcgttctaccggttcttactcgctcgtcacccagcagccgctgggcggtaaagcg
cagttcggtggccagcgctttggtgagatggaagtgtgggcgctggaagcttatggcgcg
gcctacacgctgcaagagatgctcaccgtcaaatcggacgacgtcgaagggcgcaccaag
atgtataaaaacatcgtggatggcgaccacaccatgcaggcaggcatgccggaatccttc
aacgtacttgtgaaggaaatccgctcgctgggcatcgatatcgagttagagagctag
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integrated database retrieval system
