Halomonas sp. SH5A2: HXW73_04870
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Entry
HXW73_04870 CDS
T09591
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
hash
Halomonas sp. SH5A2
Pathway
hash03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hash00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HXW73_04870 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hash03019
]
HXW73_04870 (rnr)
03016 Transfer RNA biogenesis [BR:
hash03016
]
HXW73_04870 (rnr)
Enzymes [BR:
hash01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HXW73_04870 (rnr)
Messenger RNA biogenesis [BR:
hash03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HXW73_04870 (rnr)
Transfer RNA biogenesis [BR:
hash03016
]
Prokaryotic type
tRNA degradation factors
HXW73_04870 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
OB_Dis3
AbiEi_4
Motif
Other DBs
NCBI-ProteinID:
QNI02319
LinkDB
All DBs
Position
1025148..1027550
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AA seq
800 aa
AA seq
DB search
MKYWTLSDDPHAEREAHKYDNPAPSREYLLAALEQHGKPVTHEDMSQLLGLEDEDHHEAV
RRRLAAMERDGQVLRDRRGAYALINKLDLVKGKVLGHRDGFGFLLRDDGKKPDLVLPPRQ
MRRVFHGDHVLVRISGRDRRGRDEATIADVISRNTQTIVGVYRSNTPEFGILIPENPRIT
QEVIIPHSACNGAKDGQVISAKIVKQPETRVQPVGEVIEVLGERMDPGMEIDIAIRSYEI
PAEFPPEVLDQTSGISAEVLEDDKQHRVDLRDTPLVTIDDESAKDFDDAVCAWKTKSGSW
KLLVAIADVSHYVRPGTPLDDEARKRGNSVYFPGQVVPMLPELLSNGLCSLNPHVDRLVM
VCEMNISKTGAISRYRFYEAVMNSHARLTYNKVAAILDKESEEGKALREEHAKLVKPLED
LRELYQLLREAREERGAIDFDTTETEIIFNDERKIEKIVPRTRNDAHKMIEECMLAANVA
TARFLDKHDLPALYRIHERPTPERLDKLRLFLNELGLSVGGGDMPTPQDYQALRETITGR
SDFDIIQTVMLRSMNQAVYSPQNEGHFGLAYQAYAHFTSPIRRYPDLLVHRAIRSVIRGP
RQTNTVLRVESAPVEPPSKWCPYTFEQMLELGEHCSMTERRADDATRDVESWLKCEFMSD
KLGETFDGTIASVTQFGLFVRLDAFYVEGLVHVTSLPSDYYHYEAEKHRLKGERTGTTYR
LGDGLSVQVARVDMDDRKIDFALTDEKPRPRRQPRKKPSNEGAKAGSKGDQEKPNKDKPD
TRRGPRRTRKGPRKPSPNKG
NT seq
2403 nt
NT seq
+upstream
nt +downstream
nt
atgaagtactggacattaagtgatgatccgcacgcagagcgcgaggcgcacaaatacgac
aaccctgcgccgagccgtgagtatttactggcggcgctggagcagcatggtaaacctgtt
acccacgaagacatgagccaactgctgggtctggaagacgaggaccaccatgaagcagtg
cgccgtcggctggccgccatggaacgcgacggccaggtgctgcgcgaccgtcgtggtgcc
tacgcgctgatcaacaagctcgaccttgtcaaaggcaaggtgcttggtcatcgtgacggc
ttcggctttctattgcgcgatgacggcaagaagccagacctggtattgccgccgcgccag
atgcgtcgcgtgttccatggcgaccacgtgctggtgagaatcagcggccgtgaccgccgt
ggtcgcgatgaagccactattgccgatgtcatctcacgcaatacgcagaccattgtgggt
gtttaccgcagtaatacgccggaattcggcattctgattccggaaaatccgcgtattacc
caggaagtgattatcccgcatagcgcctgtaacggcgctaaagacggccaggtcatttcg
gccaagatcgtcaaacagcccgaaacccgcgtgcagccggttggcgaggtgattgaagtt
ctcggcgagcgtatggacccgggtatggaaatcgatattgccattcgcagctatgagatc
cctgctgagttcccgccggaagtgctggatcagacaagcggtatttcggcagaagtgctt
gaagacgacaagcagcatcgggtcgacctgcgtgacacgccgctggtcaccatcgatgat
gaatccgccaaggatttcgacgatgcggtctgcgcctggaagaccaagtcgggcagttgg
aagctgctggtggccattgcggatgtttcgcactatgttcgccccggcacgccgcttgat
gacgaagcccgcaagcggggcaactcggtgtactttccaggccaggtagtgccgatgctg
ccggagttgctctcaaacggcctgtgctcgctaaacccgcacgtcgatcgcctggtgatg
gtttgcgagatgaatatctcgaaaaccggcgctatcagccgctatcgtttttacgaagcg
gtgatgaactcgcacgcccgccttacctataacaaggtggcggcgatcttggataaggaa
agcgaagagggcaaggcgctgcgcgaggagcacgcgaagctcgtcaagccgctggaagac
cttcgtgaactttatcagttgctgcgtgaagcacgtgaagaacgcggcgcgattgatttt
gataccactgaaacagaaatcatcttcaacgatgagcgcaagatcgagaaaatcgttccg
cgcacccgtaacgatgcgcacaagatgatcgaagaatgcatgctggcggccaacgtcgcc
accgcacgctttctggataagcatgacttgcctgctctgtaccgtattcacgagcggccc
acgcccgagcggcttgataaactgcgcctcttcttgaacgagctggggctttcggtaggc
ggtggcgatatgccaacgcctcaggactaccaagcgctgcgtgagacgattaccggccgt
tcagacttcgatatcatccagacggtcatgctgcgctcgatgaatcaggcggtgtattcg
ccgcagaacgaaggacacttcggcttggcctatcaggcctatgcacactttacctcgccg
attcgtcgctatcctgacctgctggtgcaccgcgctatccgctcggtgattcgcgggccg
cgccaaaccaataccgtgctgcgggtcgaaagtgccccggttgagccgcctagtaaatgg
tgcccgtacaccttcgagcagatgctcgagttgggcgagcactgttcaatgaccgagcgc
cgcgcggatgatgccacgcgcgatgtggagagctggctcaagtgcgagttcatgtccgac
aagctgggcgaaaccttcgatggcaccattgcctcggtgacacagttcggtctgtttgtt
cgcctggatgcgttctatgttgaagggctcgtgcatgtcacatcgctgccctccgactac
taccactacgaagctgaaaagcatcgcctgaagggcgagcgcaccggaaccacctatcgc
cttggcgatgggctgagtgttcaggtggcgcgcgtggacatggacgaccgcaagattgat
ttcgcgctgaccgacgaaaagccacgcccacgccgacagccgcgcaagaagccatcaaac
gaaggggccaaggctggcagcaagggcgatcaagaaaagccgaacaaggacaagcccgat
acacgtcgtggccctcgtcgcacgcgtaaaggcccgcgtaagccatcaccgaacaagggt
tga
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