Halomonas sp. SH5A2: HXW73_06880
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Entry
HXW73_06880 CDS
T09591
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
hash
Halomonas sp. SH5A2
Pathway
hash03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hash00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HXW73_06880 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hash03019
]
HXW73_06880 (rne)
03009 Ribosome biogenesis [BR:
hash03009
]
HXW73_06880 (rne)
Enzymes [BR:
hash01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
HXW73_06880 (rne)
Messenger RNA biogenesis [BR:
hash03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HXW73_06880 (rne)
Ribosome biogenesis [BR:
hash03009
]
Prokaryotic type
rRNA processing factors
HXW73_06880 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QNI02679
UniProt:
A0A7G7Z7F8
LinkDB
All DBs
Position
complement(1480406..1483720)
Genome browser
AA seq
1104 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYRGKITRVEPSLEAAFVDF
GAERHGFLPLKEISREYFVKDVSGRPSIKEVLKEGQEVIVQVDKEERGNKGAALTTFISL
AGRFLVLMPNNPRAGGISRRIEGDERSELKEAMSHLTVPDKMGLIVRTAGIGRSPEELQW
DLDYLVQVWESITTEAGKRAAPFLIYRESNVIIRAMRDYLRQDIGEVLIDSPEIHAEALA
FIRQVMPSYQQKIKLYADEVPLFSRFQIESQIETAYQREVKLPSGGSIVIDHTEALVSID
INSARATRGSDIEETALQTNSEAADEIARQLRLRDIGGLVVIDFIDMGPARNQREVENRM
RDALKLDRARVQIGRISRFGLMEMSRQRLRPSLGETSGVVCPRCNGQGTIRDVRSLSLSI
MRLIEEEAMKERSAQIRAILPVPVATYLLNEKRSVLADIESRQGVRVVLLPNPEMDTPHY
DVQRLRDDHLDEDDSQTLSSFELSTDSDVGKEPAPSFVPPAQRAEAAVKSVAHNAPAPAS
LQHEPSPESPAPAASNSEDASMLGRFMRGFAKLLGSDEQRPTPTDQAKTPSEPAAPRKTE
RSSSARREETQPNRQRNDSAAKSNTGNAQRSAGNETDDKRNGPSRTRNRRRHPQQDDSNS
TQGNGNKPNRQKDTAQASSAKDSDSDTAGKSAPPKARRESNRDTSRNASDADANTSDTKS
AAKANTDTPAAKQDDSKPKRTRNNPRQRTRQQAINPKAEAEQLKLQEEAAKAPSETDNAS
NDAATGTERQADNDSAAAAASQATAAAPADTAKQSPAEQEATAPSADSTADAVDEASATP
AERPADNAAKARKSTHQRRQPKRDSRSKGGDAASNEDTDAVQSQDQTTASEEASTPSEAI
ETPAAQAPVTEEKPKAEPAADQADVSTSSTTAAEQAAADTGAPEANTSEAVSKPATSDET
AEVSKQKAAQTPQDSDGEQAASAPEAPEKEPEQSTSEENAPEVNAEETAEEPIKASSEAV
VEDSTAEQGVAEKGTTEKASPEQAPATEPAAETPAQPEATPAQQATPNSAAVAEEAAKPR
RRRSRAHNDPRVKRKQQANDTSAD
NT seq
3315 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgatcaatgcgacccagcctgaagagctgcgcgtcgctctggttgat
ggacagcggttgtatgacctggatatcgagtccggcgcacgagaacagaaaaaagccaat
atttatcgtggcaagatcacccgcgttgaaccctcactggaagcggctttcgttgatttc
ggcgccgagcgccatggttttctaccgctaaaggaaatctcgcgggaatatttcgtcaag
gatgtttccggccgtccgagtattaaagaggtgctcaaagaaggccaggaagtcattgtc
caggtcgataaggaagagcgcggcaacaaaggtgctgcgttaaccacctttatcagtctg
gccggtcgttttctggtgctgatgcccaacaatccgcgcgccggcggtatttcacgccgc
atcgagggcgacgagcgcagcgaattgaaagaggccatgagccatcttaccgtgcccgat
aaaatgggcctgatcgtgcgcaccgctggtatcggccgaagccctgaagaactgcaatgg
gacctggactaccttgttcaggtatgggagtcgatcactaccgaagcgggcaaacgcgcc
gcgcctttccttatctaccgcgaatccaacgtgatcattcgcgcgatgcgcgattacctg
cgccaggacatcggcgaagtcctgatcgacagcccggagatccacgcggaagcgctcgcc
ttcattcgtcaggtgatgccgtcttaccagcagaagatcaagctttacgctgatgaagtg
ccgctattctcacgttttcagatcgaatcgcaaatcgaaacggcctaccagcgcgaagtc
aagctgccgtccggtggttcgatcgtgatcgaccataccgaagctctggtatccatcgat
atcaactcggctcgcgccacccgcggcagcgacatagaagaaaccgcgctgcaaaccaac
tcagaagccgccgatgaaatcgctcgtcagctacgcctgcgcgacattggcggcctggtg
gtcatcgacttcatcgacatggggcccgcccgcaaccagcgtgaagttgaaaatcgcatg
cgcgatgccctcaagctggatcgtgcccgggtgcaaatcggccgcatctcgcgctttggc
ctgatggaaatgtcacgccagcgcctgcgtccttcgctgggcgaaaccagcggcgtggtc
tgcccgcgctgcaacggccaaggcaccattcgtgatgtccgctcgctctcgctctccatc
atgcgcctgatcgaagaagaggccatgaaagagcgcagcgcgcaaatacgggccatcttg
cctgtacctgtagcgacgtacctgcttaacgaaaagcgtagcgtgctggccgatatcgaa
tcccgccagggcgttcgcgttgtgctgctgcccaacccggaaatggataccccccattac
gatgtgcagcgtctgcgcgatgaccacctcgacgaagacgacagccaaacgctttcaagc
tttgagctatccacggatagcgacgtcggcaaagaaccggcaccaagctttgtgccgcct
gcccagcgggctgaagcggcagttaaaagcgttgcccacaacgcccccgcacctgcctcg
ttgcaacatgagccaagcccggaaagcccagcacccgccgcaagcaactctgaagacgct
agcatgctgggtcgcttcatgcgcggatttgccaaattgctgggtagcgatgagcaacgc
cccacgcccactgaccaggccaagacgccgtcagaaccggccgcgccgcgcaaaaccgag
cggtcatcctccgctcgccgtgaagagacgcaacccaaccggcagcgcaacgacagcgcg
gccaagagcaatacgggcaatgcccagcgcagcgccggcaacgagaccgacgacaagcgc
aacggccccagccgcacccgcaaccgtcgccgccacccccaacaggatgacagcaacagc
acccagggcaacggcaacaagccaaaccgtcaaaaagacactgctcaggcaagttccgcc
aaggacagtgacagcgatacagcaggcaaaagcgcaccacccaaagcacgtcgcgagtca
aaccgtgacacttctcgcaatgccagtgacgctgatgccaataccagtgacactaaaagc
gctgccaaggccaacaccgatacaccggcggccaagcaggatgacagcaagcccaagcgc
acgcgcaacaacccgcgccagcgtacgcgtcagcaggccatcaacccgaaggccgaagcc
gagcagctaaagcttcaggaagaggctgctaaagcgccaagcgagacggataatgcgtca
aacgacgcggcgacaggtaccgagcgccaagccgataacgactcagccgccgcggctgct
tcgcaggcaacggccgctgctccagcggacacggccaagcaatcgcccgctgaacaggaa
gcaaccgccccttcagcagatagcaccgctgatgcagtcgacgaggcatccgccacacca
gccgagcgccctgccgacaatgcggccaaggcgcgcaagtcgacgcatcaacggcgtcag
ccgaagcgcgattcgcgttcgaaaggcggcgatgcggcatcgaatgaagacaccgacgcg
gtgcagtcgcaggaccaaacgaccgcatcagaggaggcttctacaccttccgaagccatt
gaaacgccagcagcccaggcgccggtaacggaagagaaacccaaggctgaacccgccgct
gatcaagcggacgttagcacgtcctcgacgacagcagcggagcaggctgccgccgataca
ggcgcgcctgaggccaacacctcagaagccgtctccaagccagccaccagtgacgaaacg
gctgaggtgagcaagcagaaggccgcgcagacgccacaggacagcgatggcgagcaagcc
gcgtcagcgcctgaggcgccggagaaggaacctgagcaaagcacttctgaagaaaacgca
cctgaagtgaatgctgaagagacggctgaagagcctattaaagcgagttctgaggcggta
gtcgaagacagcactgctgagcaaggcgttgctgaaaaaggcactactgagaaagcctcg
cctgaacaagcgccagccactgaaccagcggcagaaacgccggctcagcccgaggcaaca
cctgcccagcaagcgacgcccaacagcgcagcagtggctgaagaagccgccaagccacgt
cgtcgccgcagccgggcgcacaatgacccgcgcgtgaaacgtaaacaacaagccaacgat
actagcgccgactaa
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