Haliotis asinina (tropical abalone): 137273429
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Entry
137273429 CDS
T10448
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
hasi Haliotis asinina (tropical abalone)
Pathway
hasi03013
Nucleocytoplasmic transport
hasi03015
mRNA surveillance pathway
hasi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hasi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
137273429
09122 Translation
03013 Nucleocytoplasmic transport
137273429
03015 mRNA surveillance pathway
137273429
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hasi03019
]
137273429
03041 Spliceosome [BR:
hasi03041
]
137273429
Enzymes [BR:
hasi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
137273429
Messenger RNA biogenesis [BR:
hasi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
137273429
Spliceosome [BR:
hasi03041
]
Complex C
Other components
EJC/TREX
137273429
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
137273429
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Utp25_C
AAA_19
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
137273429
NCBI-ProteinID:
XP_067662215
LinkDB
All DBs
Position
2:complement(23907063..23918118)
Genome browser
AA seq
427 aa
AA seq
DB search
MADNEVENEILDYEEEENETTTEGAAGDGQVKKDVKGTYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILSMDVLCQAKSGMGKTAVFVLATLQQLEPVDGQVSVLVLA
HTRELAFQISKEYERFSKYMNNVKIAVFFGGMSVKKDEEVLKKNCPHIVVGTPGRILALT
RNKTLSLKHIKHFILDECDKMLAELDMRRDVQEIFRLTPHEKQVMMFSATLSKDVRPICK
KFMQDPMEVYVDDDSKLTLHGLQQHYVKLKDNEKNRKLFELLDVLEFNQVIIFVKSVQRC
MALAQLLIEQNFPAIAIHRAMTQEERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQERFEVNITELPDEIDI
SSYIEGR
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atggcagataacgaagttgagaatgaaatcttggactatgaggaggaagagaatgaaacc
accacagagggggcagctggtgatgggcaagtcaagaaagatgtcaagggaacatatgta
tccattcacagctctggcttcagagacttcctgcttaaaccagaactgctgcgggctatt
gtagactgtggatttgagcatccgtcagaagttcagcacgaatgcattccccaggccatc
ctttccatggatgtgttgtgccaagctaagtctggtatggggaagactgctgtgtttgtg
ctggccacacttcagcaacttgagcctgttgacggacaggtatcagtgttggttcttgcc
cacactcgtgagctggccttccagatcagcaaggagtatgagaggttcagtaagtacatg
aacaacgtcaagatcgctgtgttcttcggtggaatgtcggtaaagaaagatgaggaggtg
ctgaagaagaactgcccacacattgtagtgggaacccctggccgtatccttgccctcaca
cgtaacaagacccttagtctgaagcacatcaaacacttcatcctggacgagtgcgacaag
atgctggctgaattggatatgagacgagatgtccaagaaatattccgcctgacaccacat
gagaaacaagtgatgatgttcagcgccactctcagcaaagatgtccgaccgatctgcaag
aagttcatgcaagatccgatggaggtgtacgttgatgacgactcgaagctgaccctgcat
ggtttgcaacagcactacgtcaaactgaaggacaacgagaagaacagaaagctgttcgaa
ctccttgatgtgcttgagttcaaccaggtgatcatcttcgtgaagagcgtacagcgatgc
atggccctggctcagctcttgatcgaacaaaacttcccagctattgctatccacagagct
atgacacaagaagagaggttgtcgcgataccagcagttcaaagacttccagaagaggatt
ctggttgcaaccaacttgtttggccgaggcatggacattgagcgagtcaacattgtcttc
aactacgacatgcctgaagactctgacacataccttcacagggttgcccgagccggaagg
tttggtacaaagggtttggccatcacgtttgtgtctgatgagaatgatgccaaaatcctc
aatgacgtccaggagaggttcgaggtgaacatcacagagctgccggatgagatcgacatc
tcctcatatattgaaggacgttaa
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