Haliotis asinina (tropical abalone): 137277604
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Entry
137277604 CDS
T10448
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG5-like
KO
K11125
protein SMG5
Organism
hasi Haliotis asinina (tropical abalone)
Pathway
hasi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hasi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
137277604
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hasi03019
]
137277604
03032 DNA replication proteins [BR:
hasi03032
]
137277604
Messenger RNA biogenesis [BR:
hasi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
137277604
mRNA cycle factors
Common to processing body (P body) and stress granule
137277604
DNA replication proteins [BR:
hasi03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
137277604
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
PIN_4
Motif
Other DBs
NCBI-GeneID:
137277604
NCBI-ProteinID:
XP_067665511
LinkDB
All DBs
Position
3:18594541..18662111
Genome browser
AA seq
1086 aa
AA seq
DB search
MKKASSASNEAKPDVDKAKKIYRAALDAIRRLDEISKQKKAYRDVFLQDAVGLRNKLKEY
CERLMFYNPSDYGRKAEEVLWRKVFYDIIQVVKHNRKHVRPHGSLETAYRTHLASATGYY
QHLLFRLQQEFGLKLSGILDFHLVADPKPVTKHSSSSSSSGSKKTPQSVIEWAQRACHRC
LICLGDIARYQQDFDHGVSGATAERYYYQAIMLFPDIGMPHNQLGTLSASRYYSCEAAYH
YIRCMSTEKSFEGAHGNLQRLFEKNHKRYLELGQLQQQHRDLTPDQQQPQNIRQFFVRFL
YLLDILYDTEKSNDTTLMQSVCQATLHDFNLCMFYEPSSMAENYEAVDPAIDDPHYLDDD
IVFKIVVMCLSTIHLLQRKCSPQVTAAIAFLLALFSHILNHVTNRLQGVLYEKEHPNKLL
ESHKSIAALPHDDHNYSSTSDTERDEMSSHDTDHRSNSVDKSNMLTQEEGNKPKKHKQSR
LRNLRRRRRRHHSDSSDMSDLSEDSDLSEGGEHMEEDIVSEDSDDDLATYFDNDSDSDLS
DSLMESQELKTGFASTHGNNRSKLQLSSGSSVKMAQENGNWSELMGNQNLVTLSSELFSS
SMTFLGQDLNLDLLNTKQYQADIAAYENCKDVIQGRKDVPVPPGFLSSKEAHHVADITNK
LVNFQIETDTELSACPTDTDPSGLTETEIEADDDNSCDSYNDKVEAERLRLQRVIEVIQT
EGLLSTVKVMCDWMQCHSTIINTCAQSSQSLWCRLSVLLNFLPQEKELISHDQIWSDELK
MRLTDSSAPNWFQLFPLREDINLSGFSALADIQATIDFTSKHRGQLSEIQETFLRITCLR
HFGHFLSQSDGVEFTYNKEQAMFFGPSHTDPEVSEKAAQEKMRDAESRRNQLMRDMAQLR
LQAEVNQLEGSLQESEQPMFPPYLITETSTLCSSLPLVKQLIVSARGIMVIPLSVIDSLD
FMKKESSGAREAIRWLENEFRKGNRYIRAQKSNETLPGNNQRMLKKRNRDQWCLSEILSC
SRYLAQQSGNFSSGSVVAILTDHQLDTEQTLPAIRHSIAASQQEGVSIENIVDFAARWKD
VCKSKG
NT seq
3261 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaagcttcaagtgcgagtaatgaagcgaaacctgacgttgacaaagcgaagaaa
atctacagagctgctcttgatgcaattcgtcgtcttgatgagataagcaaacagaagaaa
gcatacagagatgtgttcttgcaagatgctgttggactcagaaataaactcaaggagtat
tgtgagaggttgatgttctacaaccccagtgactatggtcgaaaagcagaggaggttcta
tggaggaaggtgttctatgacatcatccaggttgtcaaacacaataggaagcatgtgcgt
ccccatgggtccctggagacagcctaccggacccacctggcttctgctactgggtactac
cagcatctgctgttcaggctgcagcaggagtttggcctcaagttatctggcattctagac
tttcatcttgttgcagatcccaaaccagtaacgaagcacagcagcagcagtagcagcagt
ggtagcaagaaaacaccacagtctgtgattgagtgggcccagagagcctgtcacagatgt
ctcatttgtcttggagacattgcccggtatcagcaggactttgatcatggcgtgagtggt
gccacagctgagagatactactaccaagccatcatgctgtttccagatatcggtatgccc
cacaaccagttagggactttgtctgcttcccgctactacagctgtgaggctgcctatcac
tatattagatgtatgtcgacagagaagtcgtttgaaggagcccatggtaacctgcaacga
ctgtttgagaagaaccacaagaggtatctggaacttggccagcttcagcagcagcatcgt
gacctcacaccagaccagcaacaaccacaaaacatccgtcagttctttgtccgtttcctg
taccttctggatatcctgtatgatacagagaagagcaatgacacgaccttgatgcagtct
gtatgtcaggctacgcttcatgacttcaacctatgcatgttctacgagcccagctcaatg
gcagagaactacgaggctgttgaccctgccatagacgatccccattacctggacgacgac
atagtcttcaaaatcgtcgtcatgtgtctcagcaccatccatctcctgcagaggaaatgc
tcaccccaagtgacagctgccattgcctttcttcttgcgctcttctcgcacatactgaac
catgtaaccaacagactacagggggtgctgtatgagaaggaacatcccaataagctgtta
gagtcgcacaagtccatagcagctctcccccacgatgaccacaactactcatccacctca
gacacagaacgggatgagatgtccagtcatgacactgaccacagaagcaacagtgttgac
aaaagcaatatgctgactcaggaggaaggcaataaaccaaagaagcacaagcaatcacgt
ctccgcaacttgcggcgacgtagacgacgtcaccatagcgatagtagtgacatgtcagac
ttgtccgaagattctgatctcagtgaaggtggtgagcacatggaagaggatattgtctct
gaagattctgatgatgatctagccacatactttgacaatgactctgactcggatctctct
gattccttgatggaaagtcaggagctgaagactggctttgcctcaactcatggcaacaat
cggtccaagttgcaactgagttcagggtcatctgtgaaaatggcccaagagaatggcaat
tggtcagaactgatgggaaatcagaatctagtgacattgtcatctgagttgttttcctcg
tcaatgactttccttgggcaggacctcaatctcgatctgcttaacaccaaacagtaccag
gcagacattgcagcttatgagaactgtaaagatgttatacaaggcaggaaagacgttcca
gttccaccaggtttcctgtcatccaaggaagctcatcatgtggcagatatcaccaacaag
ctggtcaatttccagatcgagactgacaccgaactcagtgcctgtcccacagacacagat
ccatctggactcactgagactgagattgaggctgatgatgacaattcctgtgatagctac
aatgacaaggtggaggctgagcgtctgagactacagcgggtgattgaggttatccagaca
gagggtcttctgtccactgtcaaggtgatgtgtgactggatgcagtgccactccaccatc
attaacacttgtgctcagagctcccagtccttgtggtgcagactgtcagttctgctcaac
tttctgcctcaggaaaaagaactgatcagccatgatcagatatggtctgatgaattaaag
atgcggctaacggacagtagcgcaccaaactggtttcaattgttccctctcagagaggac
atcaacctgtctggcttctccgccctggccgacatccaggccaccattgacttcacctcc
aaacaccggggacagctcagtgagattcaagagacatttcttcggatcacctgtctgcgc
cactttggccacttcttgtcccaatccgatggtgtggagttcacatacaacaaggaacag
gccatgttctttgggccctcacacaccgatcctgaagtcagtgagaaagcagctcaggag
aagatgagagatgcagaaagccggcgtaaccagctaatgagagacatggctcagttgagg
cttcaggctgaagtgaaccaactggaagggtccctccaggagtctgagcagcccatgttc
cctccatacctgatcactgagacttccaccctgtgctcctcactccccctcgtcaagcag
ctcatcgtcagtgccaggggcatcatggtcatccccctctcagttattgacagtttggac
tttatgaagaaagagagttctggagcccgagaggccattcgatggttggagaatgagttc
aggaaggggaacaggtacatccgtgcgcagaagagcaatgaaacacttccaggcaacaac
caaaggatgctgaagaagaggaaccgagatcagtggtgtttgagtgagatactgagttgt
tctcggtacctggcacaacaaagtgggaacttcagctctggtagtgtggtggccattttg
actgaccaccagcttgacacagaacagactctcccagccatcagacactccatcgcagcc
agccagcaagaaggtgtaagcattgagaacattgttgactttgctgcccgctggaaggac
gtctgtaagagcaaaggttga
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