Haliotis asinina (tropical abalone): 137277610
Help
Entry
137277610 CDS
T10448
Name
(RefSeq) collagen alpha-1(I) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
hasi Haliotis asinina (tropical abalone)
Pathway
hasi04382
Cornified envelope formation
hasi04512
ECM-receptor interaction
hasi04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
hasi00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
137277610
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
137277610
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
137277610
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hasi04147
]
137277610
00536 Glycosaminoglycan binding proteins [BR:
hasi00536
]
137277610
Exosome [BR:
hasi04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
137277610
Glycosaminoglycan binding proteins [BR:
hasi00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
137277610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
cEGF
EGF_CA
FXa_inhibition
hEGF
EGF_3
EGF_LRP2
Plasmod_Pvs28
Motif
Other DBs
NCBI-GeneID:
137277610
NCBI-ProteinID:
XP_067665521
LinkDB
All DBs
Position
3:complement(19153648..19174563)
Genome browser
AA seq
1509 aa
AA seq
DB search
MAFRQFLAKSCVTVMAVAVVMADAVEAMSHTTSIGFSASTPGIQYYDEGGNALFINEAFP
LVSGRLLQICFYIHKNFDNNYTGTFFVFQQNTRGYRLVFQQNVVFPETQGRHCVNMTEPP
LVSKGQFLGWRYDKDAGPISYTIPDQEIGTIVVNNVPAPMIVGNTYGSRSFIKTYFFKVE
AIIELGVTGSTGPVGTTGATGPDGRPGSTGPIGQKGDQGDMGTVGPPGTQGATGSSGQKG
DVGGQGVPGVAGPQGPQGPAGATGSPGKAGKDGVEGRTGPPGQQGETGSPGSRGMRGDAG
QTGMPGVAGVTGARGSSGEPGRDGAPGMPGITGKMGYPGMTGVRGLPGSAGMKGQRGSPG
IQGDPGMTGLPGPAGRSGTQAEPGSTGQTGSPGAKGSTGPPGRTGVTGSIGLPGTIGPVG
FPGISGATGLQGVRGADGVTGQSGPQGQPGQIGPQGPRGSSGSTGLMGTTGETGLRGPPG
LTGATGWSGAEGVTGPAGATGAVGYPGTTGFTGVAGNPGEPGVTGPNGETGVGSPGQSGA
TGASGKDAMPGVTGYTGIPGITGYVGATGAEGVTGQPGVPGAVGATGASGLAGPAGMTGP
GGHTGQQGPAGARGATGVGGADGIDGKTGPTGITGMSGQPGIPGSDGTSGSPGETGVTGS
RGNVGPEGVTGQSGLQGVSGMTGMSGDPGAPGMSGGQGPQGDPGMTGPSGQTGLSGGTGM
TGLKGDTGAMGLSGPPGHTGPVGHTGFPGLTGMSGEMGKDGAPGINGTDGAPGVTGPTGP
VGASGAVGASGVPGPQGPNGTTGPRGATGVAGRVGMSGSPGRVGATGMTGVRGSRGPEGT
TGADGMTGLTGSDGVPGSSGPDGATGHAGVSGQTGLPGSNGMPGVTGASGDAGPQGMTGY
RGFNGSDGPPGVSGINGYNGTKGDDGMTGATGEVGATGPAGTSGYTGQDGVTGAPGAMGV
TGPAGVDGMTGVTGKQGLRGQPGTQGITGVSGVQGLRGSTGMKGDVGATGPQGIPGKTGE
GATGQAGPEGATGLIGPPGMNGSSGATGLQGITGPAGMTGTPGVSGGIGLTGMSGAPGLN
GVPGLNGTTGQDGLPGASGSPGETGADGPPGVSGSTGISGSTGSTGKAGIPGSTGSPGVI
GPVGFSGMTGESGPRGYSGVPGVSGTTGLQGSAGETGTSGIPGQIGPPGLTGTIGASGVT
GSVGPNGTTGQTGPRGETGAVGYTGSTGKQGPRGVQGDAGITGWSGPRGLDGVTGSTGIA
GPAGTTGITGPEGKLYEYPDFCNSSSCEHLCFNIGDSFECRCRSGYKLAADNSSCDDVNE
CTMYGPCEQLCNNTVGSFVCSCRPGFNLSSNNRNCEDFNECKHNMCASVGYSGTPVCINT
MGSFHCIGFAPISLNKVEEHSEDGRNDGTSLSDSPQGRSFPNNLASTTYVLTILVGCLLG
AVVLIALALILLAYRTRTSRPRPPNPPTVYRLHPDMCEPRRNTPQRRDVESGAMREQSYV
NQPHPGMTL
NT seq
4530 nt
NT seq
+upstream
nt +downstream
nt
atggcgttcagacaattcttggccaagtcgtgtgttacggtgatggcagtcgcagttgtt
atggcagacgctgtagaggccatgtcccacacgacgtctatcgggttctccgcttctacc
cctgggatacagtactacgatgaggggggtaacgcgctgttcatcaacgaggcgtttccc
ctggtgtctgggcgactactccagatctgcttctacatccacaaaaacttcgacaacaac
tacacgggcacgttcttcgtcttccaacaaaacacaagaggatatagactcgtcttccag
caaaatgttgtctttcctgagacgcagggcaggcattgcgtcaacatgaccgaacctccg
ctggtcagcaagggtcagttcctcggatggagatacgacaaggacgctggtcccatctcc
tacaccatcccggatcaggagatcggaacgatcgtggtcaacaatgtccccgctccaatg
attgtagggaacacctatggaagtcggagcttcatcaagacctacttctttaaagtggag
gccattatagagctcggtgtgaccggctcgactggaccagtcgggaccaccggtgccacg
ggtccggatggacgccccgggtcgacgggtccgattggacaaaagggtgaccagggtgac
atgggaacagttggaccacctggaacacagggtgccactggcagctccggacagaagggt
gacgtgggtgggcagggggtgccaggggtcgcgggaccccaaggaccacaaggaccagcc
ggtgccacagggagtccaggtaaagcagggaaggatggagtcgagggtcgcactggtccg
ccgggacaacaaggtgaaaccggaagtccagggtcacgtgggatgcgcggggacgctgga
caaacggggatgccaggagtcgctggcgtgacaggcgctcggggatcttcgggcgagcct
ggcagggacggggcaccgggtatgccaggaatcactggcaagatgggatatcctggtatg
acgggcgtcaggggcttgccaggatcagcaggaatgaaagggcagagagggtcaccagga
atccaaggagacccgggcatgaccggattaccaggacctgcaggaagatcaggaacacag
gcagagccgggcagcacggggcagactggcagtccaggggcaaaaggatccaccggccca
ccagggcgtacaggagtcacaggcagcatcggcttaccaggaacaataggtccagtcgga
ttcccgggaatatctggagcgacaggacttcagggtgtcaggggagctgatggggtcacg
ggacagtcaggacctcagggtcagcctggacaaataggtcctcaaggtccacgtggctca
tctggttctactggcctcatgggcactacaggggagacggggttgaggggcccaccaggg
cttactggtgctactggctggtcaggggctgaaggtgtaactggaccagctggtgcgact
ggtgccgtaggttatcccggaactacggggtttacaggggttgctgggaacccgggcgag
cctggcgttactggcccaaatggcgagactggtgttggcagccctgggcagtcaggtgca
acaggggcctcggggaaagatgcgatgccaggagtcactggatatacaggcataccagga
ataactgggtatgtaggggcaacgggcgcagaaggtgtaacaggacagcctggtgttcct
ggagcagtaggggcgactggggcatcaggacttgcaggccctgcaggaatgacaggccct
ggtggacatactggtcaacagggtcctgcaggagcccggggggctactggagttggtggt
gcggacgggatagatggcaaaacgggcccaacaggcattacaggaatgtcaggacaacca
ggtatccctggtagtgacggtacctctggcagcccgggagagactggggtgacaggtagc
cggggaaacgttggtcctgaaggagttactggccagtcagggctgcagggcgtgtcaggg
atgacaggcatgtcaggtgatccaggagcaccagggatgtcgggagggcaaggacctcaa
ggagatcctggcatgacaggtccttccggacagaccggtttatcaggaggaacaggaatg
actgggctcaagggggacacaggtgccatgggtctttccggcccaccgggacacacaggg
ccagtgggacacactggatttcctggccttacaggaatgagtggagaaatgggcaaggat
ggtgcaccaggtatcaatggcacggatggggctccaggggtcactggtccaactggccct
gtaggagcttctggagctgttggtgcctctggtgtaccaggacctcagggaccaaacggc
accactggcccccgaggtgcgacaggtgtagctggccgtgttggaatgtctggatcacct
gggagagttggggccacgggtatgacaggtgttagaggctcacgaggtccggaaggaacc
acaggagctgatggtatgactggactaactggcagcgacggtgtacccggaagcagtgga
cctgatggtgcaacaggacatgctggtgtaagtggtcaaacaggacttccaggctctaat
ggaatgccaggcgtcactggggccagtggtgatgcgggtcctcaaggcatgacaggatat
agggggttcaatggttcggatggccctcctggtgtatctggtataaacggatataacgga
acaaagggcgatgatggcatgacgggtgctacaggagaggtaggggcaacaggtccagct
ggaacgagtggatatactggacaggacggagtgactggagcacctggtgccatgggcgtc
actggtcctgctggagtagatggaatgacaggtgtaactggaaaacaagggctacgagga
cagccaggtacacaaggcattactggggtgtctggggtacagggtctcaggggaagtact
ggcatgaaaggcgatgtaggggcaactggtccacaaggaataccagggaagacaggtgag
ggagcaacgggacaagcgggtccagagggagctacagggttgataggcccaccagggatg
aatggatcatcaggagcaactggtttacaaggtatcactggcccggccggtatgaccggt
acacctggagtttcagggggtataggcttaactggaatgtctggtgcaccaggcctaaat
ggggtacctggcttgaacggcactactggtcaggatggattaccaggagcatctggctca
cctggggaaactggagccgatggtccacctggagtgtctggcagcacggggatttctggt
tctacaggttctactggaaaagctgggattcctggttctactggatctcctggtgtgatt
ggtccagttggtttcagtggaatgacaggggaatctggacctcgggggtactctggagtt
cctggagtgtccgggacaacagggcttcagggatctgcaggagaaactgggacatctgga
ataccaggacaaataggacccccaggtcttacaggaacaatcggggcctcgggtgtgact
gggtctgtgggccccaatggtaccaccggacagacaggacctaggggtgaaacaggagcg
gttggttacaccggaagcacaggaaaacaggggccacgaggggtccagggggatgcggga
atcactggatggagtggaccaagaggattggatggagtgactggtagtacaggcattgca
ggcccagctggtacgacgggtattactggaccagaaggcaaactctatgaataccctgac
ttctgcaactccagctcgtgtgagcatctctgtttcaacattggcgacagtttcgagtgt
cgctgtcggagcggttacaagttggctgccgacaacagttcatgtgacgatgtaaatgag
tgcacgatgtacggaccatgtgaacaactgtgtaacaacactgtcgggagctttgtctgc
agctgccgtccaggcttcaacctctcatcaaacaacagaaactgtgaagatttcaatgag
tgtaagcataacatgtgtgcatcagttggctacagcgggacccctgtttgcatcaacact
atgggatcatttcactgtattgggtttgcgccaatctccctgaacaaagtcgaagaacat
tctgaagacggacgaaacgacggcaccagtctgagcgactcaccccaaggtcgttcgttc
ccaaacaaccttgccagcacgacctatgtgctcaccatcctcgtgggctgtctactgggg
gccgtcgtcctcattgcccttgccctcatcctcctggcctacaggacccggacatcccga
ccacgcccacccaacccacccaccgtctaccgactccaccctgacatgtgtgaaccgcgg
aggaacacccctcaaagaagagacgtggaatccggagctatgcgggaacagtcctatgtc
aatcaaccgcaccctggaatgactttgtga
DBGET
integrated database retrieval system
