Haliotis asinina (tropical abalone): 137281602
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Entry
137281602 CDS
T10448
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
hasi Haliotis asinina (tropical abalone)
Pathway
hasi03020
RNA polymerase
hasi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hasi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
137281602
09124 Replication and repair
03420 Nucleotide excision repair
137281602
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hasi03021
]
137281602
03400 DNA repair and recombination proteins [BR:
hasi03400
]
137281602
Enzymes [BR:
hasi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
137281602
Transcription machinery [BR:
hasi03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
137281602
DNA repair and recombination proteins [BR:
hasi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
137281602
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
137281602
NCBI-ProteinID:
XP_067669040
LinkDB
All DBs
Position
4:47204088..47226878
Genome browser
AA seq
1943 aa
AA seq
DB search
MAYVGDSNAPVMQVKKVQFGILGPDEIKRMSVTEGGIKYSETQEGGRPKIGGLMDPRQGV
IDRMSRCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTIKVLRCVCFFCSKMLVDSTGP
KIKDIVSKSKGHPRKRLAHVYDLCKSRKICEGGDEMDKRTEEEDPTAEKKGHGGCGRYQP
KLKRTGLEVIAEWKNVNEESQEKKIILSAERVLEIFKGISDEECVILGMDPKFARPDWMI
LTVYPVPPLAVRPAVVMFGSARNQDDLTHKLADIVKANNQLRRNEQNGAAAHIIAEDTKM
LQYHCATLVDNELPGLPRAVQKSGRPLKSVKQRLKGKEGRVRGNLMGKRVDFSARTVITP
DPNLRVDQVGVPRTIAQNLTFPELVTPFNIDRMQELVRRGANQYPGAKYIIRDNGERIDL
RFHPKSSDLHLQVGYKVERHMQDDDVVIFNRQPTLHKMSMMCHRVKVLPWSTFRLNLSVT
TPYNADFDGDEMNLHLAQSLETRAEIQNLAAVPRMIITPQANRPVMGIVQDTLCAVRKMT
KRDVFLDRGDVMKLLMFMPTWDGRLPIPAILKPKPLWTGKQIFSIVIPGRVNVTRTHSTH
PDDEDKGPYKWISPGDTKVLIEDGELICGILCKKTLGATSGALLHIVFMELGYDTAGKLY
GNIQTCVNNWLLIEGHSIGIGDTIADPETYIEIQETIRKAKTEVIEVIEKAHNDELKPSP
GNTLRQTFENQVNRILNDARDKTGSKAQKSLSEYNNFKAMVVAGSKGSKINISQVIACVG
QQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLID
TAVKTAETGYIQRRLIKAMESVMVKYDGTIRNQVEQLVQLRYGEDGLDATHVEFQSMPSL
KPSNRAFEKKFKFDPTNERDLRRCLSEEVIKDVIGDPAVISELEREFEQLKEDRNALRQI
FPTGDGKIVLPCNLMRMITNAQKIFRINTRKPADLHPIKVVEGVRELCRRLIVVAGEDRL
SIQANANATILMKILVRATLCSKRVANEFRLSAEAFEWIIGEIETKFLQAQAHAGEMVGA
LAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINISKKPKTPSLTVYLLDQAAR
DAEKAKDVLCRLEHTTLRKVTANTAIYYDPDPMNTVIVEDQEWVSVYYEMPDFDASRISA
WLLRIELDRKRMTDKKLTMEQISEKITAGFGDDLNCIFNDDNAEKLVLRIRIMNSDESKN
EEEEIADKMEDDVFLRCIEANLLSDMTLQGIEAIAKVYMHLPTTDDKKRIFITDEGEYKA
AAEWILETDGTALMKVLSERDIDPIRTYTNDIVEVFATLGIEAVRKAIEKEMNHVISFDG
SYVNYRHLALLCDVMTAKGHLMAITRHGINRQETGALARCSFEETVDILMEAAAHGEHDP
MKGVSENIMLGQLAKIGTGCFDLLLDAEKCKYGMEIPTAGGSGMMSGAGTGMFFGSVGSP
VSGMSPQMTPWNQGATPAYASAWSPGIGSGMTPGQAGFSPSAASESGFSPGYSPAWSPQP
GSPGSPASPYIPSPRGAMSPSYSPASPSYMPSSPAMTPQSPGYSPTSPSYSPSSPGYSPT
SPKYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY
SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPNFSPQS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPKYTPTSPSYS
PSSPSYSPSSPQYSPTSPKYSPTSPSYSPSSPKYSPSSPNYTPTSPQYSPQSPEYSPSSP
QYSPSSPQYSPSSPTYSPTSPKYTPTSPTYSPTSPRYSPTSPTYTPTSPKYSPTSPTYTP
TTPKYSPTSPRYSGQGDEDSDED
NT seq
5832 nt
NT seq
+upstream
nt +downstream
nt
atggcgtacgtgggagactcgaatgccccagttatgcaggtgaagaaggtccagttcgga
atattgggaccggatgagattaaacgaatgtctgtgactgaggggggtatcaaatactcc
gaaacccaggaaggtggccggccgaagataggcggactgatggacccacgacaaggagtt
attgacaggatgtctcgatgtcagacctgtgctggcaacatgacagaatgtcctggacat
tttgggcacattgagctggccaagcctgtgtttcatgttggatttcttgtgaagacaatc
aaagtgttgcgatgtgtctgtttcttctgctcaaagatgctggtggattcaactggtccc
aaaatcaaagatattgtcagcaaatctaaaggccatcctcgcaagcgacttgctcatgtg
tacgacctgtgcaaaagtcgtaaaatttgtgaaggtggagatgaaatggacaagcgaact
gaggaggaagatccaacagcagaaaagaagggtcatggtggctgtggcagataccaaccc
aaactgaagagaactggtcttgaggtgattgcagaatggaagaatgtgaatgaggagtca
caagagaagaaaattattctgtctgcagagcgagtacttgaaatcttcaaaggaatttct
gatgaagagtgtgtgattctgggaatggacccgaaatttgcacgtcctgattggatgatt
ctgacagtgtatcctgtaccaccattggctgttagaccagctgttgtcatgtttggttca
gcaaggaatcaggatgatttaactcacaagctggccgacattgtcaaggccaataaccag
cttcggcggaacgagcagaacggagctgcagctcacatcatagctgaagacacaaagatg
ttgcagtaccactgtgccacacttgtagacaacgagctgcctggtttgccaagggcagta
caaaagtcaggccgtcccctgaagtcagtaaaacaaagattgaagggaaaggaaggtcgg
gttcgaggaaacttgatgggaaagcgggtggacttctctgcacgtactgtcatcacgcca
gatcccaatcttagagttgaccaagttggtgttcccagaaccattgcacagaacttaaca
ttcccagaactggtcacaccattcaacattgacagaatgcaggagctggtacgtcgtgga
gccaaccagtaccctggagccaagtatatcatccgagacaatggagaaaggattgatctc
cggtttcatcccaagtcatcagacttgcatctccaagttggctacaaggtggagagacac
atgcaagatgacgatgtggtcatcttcaacagacagcccactctccacaagatgagtatg
atgtgtcacagagttaaggtcttgccatggtcaaccttccgtctcaatctcagtgtaacc
acaccctacaatgctgattttgatggtgatgagatgaaccttcacttggcgcagtcactg
gaaacccgggctgagattcaaaacctggctgctgtccctcgtatgatcatcaccccccag
gccaataggcctgtcatgggtattgtacaggacacattgtgtgctgtcaggaaaatgacc
aagagagatgtttttctagacagaggtgatgtgatgaagctgttgatgttcatgccgacg
tgggatggccgactgccgattccagccatcctcaaacccaagccattatggacagggaag
cagatcttctccatcgtcattcctggtcgagttaatgtgacaaggactcacagcacacat
ccagatgatgaagacaaaggaccgtacaaatggatatctccaggagacaccaaggtgttg
atagaagacggtgagttgatctgtggaatcttgtgtaagaagactcttggtgccacttct
ggagcactcctgcatattgtgttcatggaactgggctatgacacagcaggcaaactgtat
ggtaacattcagacatgtgtgaacaactggctgttgatcgagggtcacagcattggtatt
ggagacaccattgctgatccagagacatacatagaaattcaggagaccatccgtaaagcc
aagacagaggtgatagaggtcattgaaaaagcccacaacgatgagttgaaaccatctcct
ggtaacacactcaggcagactttcgagaatcaggtcaacagaatcctgaacgatgctcgt
gacaagactggaagtaaggctcagaagtctctgtctgagtacaacaacttcaaggctatg
gtggtggctggatccaaaggatcaaaaatcaatatctctcaggttattgcctgtgtggga
cagcagaacgtggagggtaaacgtattccgttcggtttcaaacatcggacactgcctcac
ttcatcaaagatgactatggtccagagtctcgaggctttgttgagaactcctatcttgcc
ggattgactccttcagagttcttcttccatgccatgggtggaagagagggtctcattgat
actgctgtgaaaactgcagagactggttacatccagcgtcggttgatcaaggctatggag
agtgtgatggtcaagtatgatggcacaatccgtaaccaggtagaacaactggtccagttg
aggtacggtgaggacggtctggatgccacacacgtcgagttccagagcatgccttctctc
aagccatcaaacagagccttcgagaaaaagttcaagtttgacccaacaaatgaaagggat
ttgagaaggtgtttgtcagaggaggtcatcaaggatgtgattggtgacccagctgtcatt
tctgaactggaacgtgaatttgaacagttgaaagaagacaggaatgccctaaggcagatt
ttcccaacaggggatggaaagattgtgttgccatgcaacctgatgagaatgatcacaaat
gctcagaaaatcttccggatcaacacaagaaaacctgcagatctacacccaatcaaagtt
gtggaaggtgtgcgagaactgtgccgtagactgatcgttgtggcaggagaggacaggctc
agtatccaggctaatgccaacgccaccatcctcatgaagattttggtcagagccactctt
tgctccaaacgtgtagccaatgagttcagactctctgcagaagcatttgaatggatcatc
ggtgaaattgagacaaaattcttacaagctcaggcccatgcaggtgagatggtgggagcc
ctggccgcccagtctcttggagaacctgccacgcagatgacactgaacactttccattat
gctggtgtgtcagccaaaaacgtcaccctgggtgtacctcgtctgaaagaaatcatcaac
atctccaagaagcccaagacaccctccctgactgtgtaccttctggaccaggcagcaagg
gatgcagagaaggccaaggatgtattgtgtcgacttgagcacaccacgttgaggaaggtg
acggctaacacagccatctactatgaccctgaccccatgaacactgtgattgttgaggac
caggaatgggtcagtgtgtattacgagatgccagactttgacgcatccagaatctcagct
tggctgctccgcattgagttggacaggaagcgtatgacagacaagaaactcaccatggaa
cagatctcagagaaaatcactgcagggtttggagatgatctcaactgcatcttcaatgac
gacaacgccgaaaaacttgttctgagaatccgaatcatgaattctgacgaaagcaaaaat
gaggaagaggaaattgcagacaagatggaggacgatgtgttcctccgatgtatcgaagcc
aacctcttgtctgacatgacactgcagggcattgaagctattgccaaggtgtatatgcat
ttgccaaccactgatgacaagaagcgtatcttcatcacggatgaaggagaatacaaggct
gctgctgagtggattttggagacagatggtaccgccctgatgaaggtgctgagcgaacga
gacattgaccccatcaggacgtacactaatgacatcgtggaggtgtttgctaccctggga
attgaggctgtgcgtaaggccatagagaaagagatgaaccatgttatctcctttgatggt
tcctatgttaactaccgtcacttggcgcttttgtgtgatgtgatgacagccaaaggtcac
ttgatggccatcacacgtcacggtatcaacagacaagaaacaggtgctctggccagatgc
tcctttgaggaaacggtggacatcttgatggaggcagcagcccacggcgagcacgacccg
atgaaaggtgtgtctgagaacattatgttgggacagctggctaagattggcacaggctgc
ttcgacctgctcctggatgcagagaaatgtaaatatggcatggaaatccctacagctggt
ggatcaggaatgatgtcaggtgcaggaactggtatgttctttggcagtgttggcagccct
gtgagcggcatgtctccacagatgacaccgtggaaccagggagccacgcccgcctatgcc
agtgcatggtctcccggtatcggcagcggcatgacacctggacaggcaggcttctctcca
tcagctgctagtgagagtggcttcagtccaggttacagccctgcctggtcacctcagcca
ggctcgcctggctcgccagccagtccttacattcccagtcctcgtggcgccatgtcacca
agctactcacctgcatcaccatcttacatgccaagctcgccagccatgacccctcagagt
cctggctactcaccaacaagtccatcatactcaccatctagtcctggatattcaccaact
tcacccaagtacagtccaacttctccgtcgtattcaccaacaagcccaagttacagtccg
acatcaccatcctactctccaaccagcccatcgtattctccaacaagcccaagctacagt
ccaacatcaccatcctactctcctacaagcccatcctacagtcctacaagcccatcttac
agcccaacctccccatcctacagtcctacttccccctcctatagtcctacaagcccctcc
tattctcctacaagcccctcctactcccccacaagcccctcatattctccaaccagtcca
agctacagtccaacaagcccctcatactctccaagctctcctaacttcagccctcagtca
ccttcctactctccaaccagcccatcctatagcccaacaagtccctcgtactcacccaca
agtccgagctacagcccaacctcgccaagctactctccgaccagtccttcttacagcccc
agcagtccaagctattccccgagctcacccaaatacactccaaccagtccatcctattcc
ccaagcagcccatcttactcccccagctctccacagtactctccaacttcccccaaatac
agcccaaccagcccatcctactctccaagcagccccaagtactccccgtcatcccccaac
tacaccccaacttccccacagtacagcccccagtctcctgagtacagcccctcctcccca
caatacagtccaagctcacctcagtactctccctcctctccaacctactccccaaccagt
cccaaatacaccccaacttccccaacctactctcctaccagtcctcgatactccccaaca
tcacctacatacactccaaccagtccaaagtactccccaacctcccctacgtacacccca
accacacccaagtactccccaaccagcccacgatattcaggtcaaggtgatgaagacagt
gatgaagactag
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integrated database retrieval system
