Haliotis asinina (tropical abalone): 137287406
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Entry
137287406 CDS
T10448
Name
(RefSeq) protein PAT1 homolog 1-like isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
hasi Haliotis asinina (tropical abalone)
Pathway
hasi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hasi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
137287406
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hasi03019
]
137287406
Messenger RNA biogenesis [BR:
hasi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
137287406
mRNA degradation factors
5'-3' decay
Decapping complex
137287406
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
137287406
NCBI-ProteinID:
XP_067675773
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All DBs
Position
6:24994139..25020640
Genome browser
AA seq
863 aa
AA seq
DB search
MADPHVAFGSGFSALGAGKLNQIDNELMEAPEDEDDFDVLNEETFGDIGDTEFDWEKQHE
RFAEELEAHSFNDSRQNGNRTRDSGFDTAEKSYRLQEEIMEQSINHLVLDEEEERHLTDP
AIVNVSGSAAIPFSSHKQPNLDKLFGPSSPPAFLDTEHLVSPTSKNIWGSPARDSFTKPV
NKLQALFDSAKGAGSPTQNSSNPSVIQAKPQVSGILPAPQSPIVPPSAQTLAEIENQLLK
KKTPTVMTAEELERQMRGESPPNRPPAKRTIATPGSVSTFPDHKSPFSMPVPIQPIGRPL
GPMMPNLSQPPPGFSPVQVSRSHDGRMSPLHQRSMTPPLGGHSPGQGFMGMSSSPLARSI
SPTPPQLCGTPIHRPPSPVQARFMSPYNSPGGIYMGNANRSFSSPVIIPRGHRVPMPFGP
MGSPGQRFPHHSPMSDPHGMRGPRPGRGGPYHPNNYYHKNQGHPHGQNNNNPHRYFNDSR
SRQHHEDDLVDHNMDEDSYDGLMTQKEKDWIIKIQLMQLQTDNPYLDDYYYTYYTLKKKA
KERQKLRESGEFSDDDPKLVIPNLAKVETKAYTPAQFEGSLGRLTTASVHNPRTIIDLSK
NVAQTKEDNPQNVSKELRRVRQLLMDIEKGFLLLLDIDDLEKKLLALPEESRMPLVFERR
EKVDQLFAFLSADDNIETFIQIMSVRKGRKLLSRVLPLLDPAQQCIIVSLMLCNLTQLMR
KDQAEEGQSMLTDSVHQALNKSSFEMLATVGEQIRQMQSQGKAITAMLQNKFGSTILCAM
LARMEDIYKDTSPVDIDNQLQTNWCHFVELLVECLSEVSDENIVAPLNPSEKLVEHLERL
LNKKLVASLEDKLLVILGTKSQS
NT seq
2592 nt
NT seq
+upstream
nt +downstream
nt
atggctgatccgcatgttgctttcggttcaggcttctctgcccttggggcagggaagctt
aaccagatagacaacgagctgatggaggccccagaagatgaagacgactttgatgtacta
aatgaagagacatttggcgatattggagacactgaatttgattgggaaaaacaacatgaa
agatttgctgaagaattggaggcccactcatttaatgattcaagacaaaatggtaatcga
accagggattcaggctttgacacagctgaaaagagctacagacttcaagaggagatcatg
gaacagagcatcaaccacctggtgctggatgaagaggaggagcgccacctcactgaccca
gctattgtcaatgtgtctggaagtgctgccataccattctcctcccataaacaacctaat
cttgacaagctgtttggaccatcgtcccctccagctttcctggacactgaacacttggtg
tcccccaccagcaagaacatatggggttctcctgccagggactcctttacaaaacctgta
aacaaacttcaggctttgttcgactctgccaagggggctggaagtcctacccagaattcc
agtaatccgtcagttatccaagccaagcctcaggtgtcaggtattcttcctgctccccaa
tctcccatagttcctccaagtgcccaaacactggcagaaattgagaaccagttgctaaag
aagaagacacccacggtgatgacagctgaggagttggagcgccagatgcggggagagtcc
ccaccgaaccgcccccctgcgaagagaaccattgccacaccaggcagtgtctccaccttt
ccagatcacaagtcccccttctccatgccagtacccatccaacctattggtagacctctc
ggtcccatgatgccaaatttatcacagccaccaccagggttcagcccagtgcaggtgtct
cgttctcatgatggacgtatgtcacccctccaccaacgatcaatgacaccacctcttgga
gggcactcacccggccaaggctttatgggcatgtcatcgtcccctcttgcacggtccatc
tctcccacccctccccaactctgtggtactcccatacacagacctccatccccagtgcaa
gccaggtttatgtcgccctacaacagtcctggtggcatctatatgggaaatgcaaaccga
tcgttctccagcccagtcatcataccaagaggtcaccgagttcccatgccctttggtcca
atgggcagtccaggccaaaggttcccccatcattcaccaatgtcagatcctcatggaatg
agaggacctcgtccaggcaggggaggaccatatcatccgaataactattaccacaaaaat
caggggcaccctcatggccagaacaacaacaatccccatcggtacttcaatgacagtcgc
agcaggcagcatcatgaggatgacttggtggaccacaacatggatgaggacagctacgac
gggctgatgacacagaaggaaaaagactggataatcaagatacagctaatgcagctgcag
actgacaacccctacctcgacgactattactacacttattatacactaaagaagaaggca
aaggagagacagaagttacgagagagtggggaattcagtgatgatgatcccaaacttgtc
ataccaaaccttgcgaaagtggaaacaaaggcttacacaccagctcagtttgaaggttca
ttaggccgtttaacaactgccagtgttcacaatcctcgcacaatcattgatctgtccaag
aatgtagctcaaacaaaggaggacaaccctcaaaacgtcagcaaggagctgcggcgagta
cgccagttactcatggacattgagaagggatttcttcttctgcttgatattgatgacctg
gagaagaaactgctggcacttcctgaagaaagcaggatgcctctggtttttgaaagaagg
gagaaagtggatcagttgtttgccttcctttcagctgatgataacattgaaacatttatt
caaatcatgtcagtaaggaaggggagaaaactcttatcacgagtcttgcctttgcttgat
cctgctcagcagtgtattattgtctccctgatgctgtgtaacctcacacagctcatgagg
aaagatcaagcagaagagggccagtcaatgctgacagattctgtgcatcaagccctgaac
aagagttcatttgaaatgctggcaacagtgggagaacagattcggcagatgcagagccag
ggaaaagcaataacagccatgttgcaaaacaagtttggttccaccatattgtgtgcaatg
ctggccagaatggaagatatttacaaggatacctctcctgttgatattgataatcagctg
caaacaaactggtgtcattttgtggaactgttagttgagtgtttgtctgaagtctctgat
gagaacatcgttgcacccttgaacccgagtgaaaagctggtggaacacctggagaggctc
ctcaacaagaagctagtggcaagcttggaggacaaacttcttgtgatacttggcaccaaa
tcccaatcctga
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