KEGG   Haliotis asinina (tropical abalone): 137290399
Entry
137290399         CDS       T10448                                 
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4 isoform X1
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
hasi  Haliotis asinina (tropical abalone)
Pathway
hasi03018  RNA degradation
hasi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:hasi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    137290399
  09123 Folding, sorting and degradation
   03018 RNA degradation
    137290399
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hasi03019]
    137290399
   03041 Spliceosome [BR:hasi03041]
    137290399
Messenger RNA biogenesis [BR:hasi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     137290399
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     137290399
Spliceosome [BR:hasi03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    137290399
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 137290399
NCBI-ProteinID: XP_067677406
LinkDB
Position
7:42519166..42959122
AA seq 134 aa
MLPLSLLRTAVNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDRFWRMPECY
IRGSTIKYLRIPDEVIDMVKEEVIQKNKGRGDMRGRGGQRGRGRGAFSAGGRGGRGGGRG
GGGGQQKPGKGRGN
NT seq 405 nt   +upstreamnt  +downstreamnt
atgctgcccttatcacttctaagaactgctgtcaaccacccgatgctggttgagttgaag
aatggtgaaacatacaatggacatcttgtcagctgtgataactggatgaacataaacttg
agggaggttatctgcacatctcgggatggtgatagattctggaggatgccagagtgctac
attcgaggaagtacaatcaagtatctcagaattcctgatgaggtcattgacatggtgaag
gaagaagtcatccagaagaacaaaggtcgtggagacatgcgagggaggggaggtcagcgt
gggagaggtagaggtgcattctcagctggaggacgaggaggtcgtggtggaggtcgagga
ggcggtggaggtcagcagaagccagggaaaggtcgcggcaactga

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