Haliotis asinina (tropical abalone): 137290401
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Entry
137290401 CDS
T10448
Name
(RefSeq) exosome RNA helicase MTR4-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
hasi Haliotis asinina (tropical abalone)
Pathway
hasi03018
RNA degradation
Brite
Enzymes [BR:
hasi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
137290401
Messenger RNA biogenesis [BR:
hasi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
137290401
Spliceosome [BR:
hasi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
137290401
Complex C
U4/U6.U5 tri-SnRNP related factors
137290401
Ribosome biogenesis [BR:
hasi03009
]
Eukaryotic type
Pre-60S particles
Helicases
137290401
Transfer RNA biogenesis [BR:
hasi03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
137290401
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
AAA_22
nSTAND3
Helicase_dom4_arc
Motif
Other DBs
NCBI-GeneID:
137290401
NCBI-ProteinID:
XP_067677410
LinkDB
All DBs
Position
7:63212469..63256002
Genome browser
AA seq
1031 aa
AA seq
DB search
MANSFGDDLFDVFDETPEANPAKHIEGKDASSVENLSDEKRAEDLLRQIVGKTKRAAGTE
FESQESKKQKTEDGVSDANTEVLPRIQVHRVETVEACLHEVAVPPDEEFVPLKPSQKKAA
KDFPFILDPFQKEAILCLENNQSVLVSAHTSAGKTVVAVYAIAMSLQVKQRVIYTTPIKA
LSNQKYRELFEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVIFDE
IHYMRDKERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVVYTDYRP
IPLQHYIFPAGGDGLHLVVDENGDFREENFNTAMGVLKDAGDAAKGDQRGRKGGSKSHES
NCFKIVKMIMERSFAPVIVFSFSRKDCEAYAMQMAKLDFNTEEEKGLVEEVFNNAIDSLS
DEDKKLPQVENVLPLLKKGVGIHHSGLLPLLKETIEILFSEGLIKALFATETFAMGLNMP
ARTVLFTAARKFDGKDFRWVTSGEYIQMSGRAGRRGLDERGIVILMVDEKMSPSVGKTLL
KGLPDPLNSAFHLTYNMVLNLLRVEEINPEYMLERSFYQFQNYAAIPDLVEKLRRKEEDY
RSMKIQNEDQVSSYFKIRQQLDNLGHDMMHFIQKPAYLLPFLQPGRLVKVKNKEDDFGWG
VVINFQKKMDQSKATDDTGPLYIAEVLMYITKESAKSRRTTDIKPCPKGQRGEMQVVPVL
TTLIEGISAIRLYVPQDLKSYDKRQSVYKSLQEVEKRFPDGLPPLDPIEDMGIKDKKLQE
IIKKTEAFEHRLYSHPLHKDPQLEELYSLYDKKTRVGNEVKAIKSELKKKKSLLQMDELK
CRKRVLRRMGYATSSDVIEIKGRVACEISSADELLLTELLFNGVFNNLTEQQSCALLSCF
VFQENSNEMPKLTEELSGPLRIMQDTARRIARVSREAKLEHLEEEAYAETFRPHMMDVVN
AWCNGSTFSQLCKMTDIFEGSIIRCMRRLEELLRQMVQAAKAIGNTELENKFSEAIRRIK
RDIVFAASLYL
NT seq
3096 nt
NT seq
+upstream
nt +downstream
nt
atggcaaattcttttggagacgatttatttgatgtttttgatgaaacacctgaagcaaac
cctgccaagcatatcgagggaaaagatgcttcttctgtcgagaacttaagcgacgagaaa
agagctgaagaccttcttcgacagattgtaggaaaaactaagagggcggcagggactgaa
tttgaatcccaggagtcaaagaagcaaaaaacagaggatggtgttagtgatgccaataca
gaagtcttgcctcgaatccaagtacacagagtggaaacagttgaggcctgtttgcatgag
gtggcagtacccccagatgaagagtttgtacccctcaaaccctcacagaagaaggctgct
aaagacttcccctttatcctggatccatttcagaaggaggccattctatgtcttgagaac
aaccagtctgtgctggtgtcggctcacacatcagctggaaagactgttgtagctgtttat
gctatcgccatgtcgctacaagtgaagcagagggtcatctacactactcccatcaaggct
ttaagtaatcagaaataccgagagctatttgaagagtttcaggacgtggggctgatgact
ggagacgtcaccatcaatcctactgccagctgcctcgtcatgactacagagattttgaga
agcatgttgtatcgtggatctgaagtgatgcgagaggtcgcttgggttatatttgacgag
attcattacatgagagacaaagagagaggtgtagtctgggaagaaaccattattttgctg
cctgacaacgtccactacgtgttcctgtctgcaaccattcccaacgcccgtcagtttgca
gagtggatctgtcacttacacaaacagccatgccatgttgtgtacactgactaccgtccc
atcccactccagcactacatcttccctgcaggcggggatggactacatctggttgtggat
gaaaatggagattttcgagaggagaacttcaacactgccatgggtgtattgaaagatgca
ggagatgctgccaagggagatcagcgggggcgtaaaggtggctctaagagtcacgagtcg
aactgcttcaagatcgtcaagatgatcatggagagaagctttgctccagtcattgtgttc
agtttcagccgtaaggactgtgaagcatacgcaatgcaaatggccaaactagacttcaac
acagaagaggagaagggtttggtggaggaagtgtttaacaatgctatagattcgctgtct
gatgaagacaagaaactgccacaggtggagaatgtgctgccccttctgaagaaaggtgtt
gggatccatcactcagggttacttcccctgctgaaagaaaccattgaaattctcttctca
gaaggtctcatcaaggcactgtttgctacagagacatttgcgatgggacttaacatgcct
gccagaaccgtgctgtttacagctgcccggaagtttgacggcaaggacttcagatgggtg
acgtctggcgagtacatccagatgagtggtcgagctggacgtcgtgggttggacgagcga
ggaattgtcatcctgatggtggacgagaagatgagtccgtctgtcggcaaaacacttctc
aagggccttcctgatcccctgaacagcgccttccacctgacgtacaacatggttctcaac
ctgctgcgcgtggaggagatcaaccccgagtacatgctggagagatccttctaccagttc
cagaactatgctgccatccccgaccttgtggagaagctgcgtcggaaggaggaggactac
aggtctatgaaaatccagaacgaggaccaggtgtcttcgtacttcaagatccgtcagcag
ctggataacctaggccatgacatgatgcacttcatacagaagcctgcctacctgctccca
ttcctgcagcctggaagactcgtcaaggtgaagaacaaagaagatgactttggttggggt
gttgtcatcaacttccagaagaagatggaccagagcaaggcaactgatgacacaggtcct
ctctacatagcggaagtactgatgtatatcaccaaggaaagtgcaaaatctcgtagaaca
actgacataaagccttgtcccaagggccagcgtggagaaatgcaggttgttccggtgttg
acgacactgatcgagggaatcagtgcaatcagactgtatgtcccacaggacctcaaaagt
tatgacaaacggcagagtgtctacaagtctctccaggaagtagagaagcgctttcctgat
ggcttacctcctcttgatcccatagaggatatgggcatcaaggacaagaaactccaagaa
atcataaagaaaactgaagccttcgaacatcgtctatactctcatccgcttcataaggat
ccccagctggaagagctgtactccttgtatgacaagaaaactcgggttggtaatgaggtg
aaggccatcaagtctgagctgaagaaaaagaagtccctgctgcagatggatgaactcaag
tgtcggaagcgtgttctccggaggatggggtacgcaaccagctctgatgtcatcgagatc
aagggccgggtggcgtgtgagatcagcagcgctgatgaactgttgctgacagagctactg
tttaacggtgtcttcaacaaccttacggagcagcagtcctgtgccctccttagctgcttt
gtgttccaggagaattcgaatgagatgcctaaactgactgaggaactctcaggaccactg
cgtatcatgcaggacacagctcggcgtatcgcccgagtgagtcgggaagccaagctagag
catctcgaggaggaggcttatgctgagacattccgaccacacatgatggacgttgtgaac
gcttggtgcaatggatcaacattttcacagttatgtaaaatgacagacatctttgaaggt
agtataatccggtgtatgcggaggctggaggaactcctcagacagatggtgcaggcagct
aaagccattggaaacacagagctggaaaacaagttctcagaagctatcagaagaatcaag
agggatattgtgtttgctgctagtttatacttatag
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integrated database retrieval system
