Haliotis asinina (tropical abalone): 137298473
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Entry
137298473 CDS
T10448
Name
(RefSeq) collagen alpha-1(II) chain-like isoform X1
KO
K06236
collagen type I alpha
Organism
hasi Haliotis asinina (tropical abalone)
Pathway
hasi04512
ECM-receptor interaction
hasi04518
Integrin signaling
hasi04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
hasi00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
137298473
04518 Integrin signaling
137298473
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
137298473
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
hasi00536
]
137298473
Glycosaminoglycan binding proteins [BR:
hasi00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
137298473
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
137298473
NCBI-ProteinID:
XP_067686852
LinkDB
All DBs
Position
10:7383201..7406899
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AA seq
2132 aa
AA seq
DB search
MWREALIALLALAAVIHAQGVESECYDEAGEEVADGDSWIPDITDPCYVCTCSGTQAICK
DTASSCASVDCGDDEPVKPVGVCCATCPDKPSNTEQEMLGDEASEGGSDIAKSRIRRQAG
GRGAGSRRRTSTRRPSSRRTGSFSTRGGAGKAGGKRGSSFSFSSGGGGAGGAGGKRRGGG
TGSSFSFGSGGAGGGGAGGGGAGGAGGKRRGGGTGSSFSFGSGGAGGGGGGGGAGGGAGG
GAGGAGGAGGAGGGAGGKRRGGGTGSSFSFGSGGAGGGGAGGGGAGGAGGAGGKRRGGGT
GSSFSFGSGGAGGGGAGGGGAGGAGGAGGAGGAGGKRRGGGTGSSFSFGSGGAGGAGGGG
AGGAGGKRRGGGTGSSFSFGSGGAGGAGGGGAGGGGAGGAGGAGGKRRGGGTGSSFTFGT
GGTGGTGGTGGTGGKTGTFTFGTGGSGGTGGKTSGSTFTFGSGGTGGTGGKTSGGSFTFG
TGGKRGTGGTGGTGGTGGKTSGSTFTFGSGGTGGTGGTGGTGGKTSGGSFTFGTGGKRGT
GGTGGTGGTGGKTGGSTFTFGTGGTGGTGGAGGTGGKTSGGSFTFGTGGKRGTGGTGGTG
GTGGKTGGSTFTFGTGGTGGTGGTGGTGGKTSGSSFTFGTGGTGGTGGTGGTGGTGGKTS
GGSFTFGSGGGAGGAGGGGGSGGSGGSGGKTSGGSFSFGSSGTGGKTGGKTGGGFAFGSG
TAGTKTSGSSSGSTVSDKDLNIGSRSGSGGSGSSSWSSSSRSGSSGTGGSGASGTAGGAS
GTRGTAGTAGTAGRGSSSGTRSYGTSGASGSRTRSSGSSRSSSSRGSSRSYSTSSRGRSR
SSGSSGRRRTAQNTQGNVKAGPAFSPQYYSPGAPGPRGPPGPPGQPGPQGFQGTRGESGD
PGPPGSPGQRGFAGPPGPPGLDGEEGMPGDPGPAGALGAPGAAGRPGMPGMPGPKGHRGA
SGRPGRDGEQGKQGEKGIPGAAGAPGASGPQGPRGSPGERGRDGSPGAPGIRGEDGMAGN
VGPAGPIGPPGAPGFPGSSGAKGDAGQSGDRGPMGAQGAPGNNGAAGQPGQPGRPGSPGD
DGNPGTKGEMGPAGGPGSPGFPGPQGPPGAAGAPGPAGGKGDQGRDGSPGSQGEVGAAGQ
PGAQGERGLPGLPGQEGKRGATGAGGPPGPPGPSGERGLPGTPGMTGRPGAAGVPGKDGA
RGLQGERGEAGQQGVPGPPGSAGQTGARGAPGLSGADGAPGERGPAGNPGVDGNPGEQGP
QGIQGPPGLQGPAGNKGDTGPAGKDGDVGRPGAPGARGPRGPAGEAGLEGPPGSPGAEGE
IGPSGRPGEQGFQGLPGPAGPPGEAGRPGPPGETGIPGEVGASGERGERGAPGEVGVAGS
RGAPGERGPSGPSGEVGQAGPPGPAGARGDAGAQGLIGMPGERGPIGRPGAQGNRGLTGE
RGQDGEPGRPGEAGPPGSPGQPGPSGLVAAKGDRGETGPAGEPGPPGSSGQRGPAGAQGP
QGPTGLAGPTGEMGQPGDDGQTGAKGDTGARGYPGEAGPIGAPGNEGREGRKGNRGSAGI
PGNSGTPGDPGRAGPPGAPGAQGAPGPAGATGLAGDSGERGETGPPGRAGEPGSPGLPGL
DGAQGERGSTGLTGPAGPAGPVGPQGERGANGFPGAQGEAGAAGPPGAAGEPGLRGENGN
DGAPGQAGPPGPTGPAGYPGETGQPGSPGKDGPLGAVGRPGAKGARGAAGATGPPGLNGP
VGAPGNSGPPGPQGERGERGEVGPSGPAGLTGQRGPAGARGAQGEKGENGWDGAKGDKGW
PGMPGPQGPPGPLGSNGDPGPPGPPGVAGQSGKAGSRGRPGRSGSPGQQGPPGPSGARGP
AGDDGLSGPKGPPGPPGPPGPPGYGPVYSPQPNWNKGPDPYQYDEPEGGMAVYENLNRVR
EAIARIGHSRLGSRTSPGKNCRDIKLSNPDFKDGEYWIDPNGDSALDAIKVFCRMETLET
CVKPKFSEYRRDRWTKDTTSGQYFMSDVFGKVKQFKYDIDDRQMKVLQFDSQSARQGVTY
HCLNSHTYGTRFITDSGDELDSAEGRFKRSTYIDILEGECESVSSKDNQWHRNRYEVRTN
KSELLPLVDVLLFDIGGENQQFGIELGEVCFS
NT seq
6399 nt
NT seq
+upstream
nt +downstream
nt
atgtggagagaggctttgatagccctattggctcttgcagccgtgatacacgctcaaggc
gttgagagcgaatgctatgatgaagcgggtgaagaggttgccgatggcgacagttggatt
ccggacataactgacccatgctacgtgtgcacatgcagtggaacacaggctatctgcaag
gatacagcctcctcctgtgcgtctgtcgactgtggtgatgatgagcctgtgaagcctgtt
ggtgtatgctgtgccacgtgcccagataaaccttccaacacagagcaggaaatgctcggt
gatgaagcatcagaggggggatctgatatagctaagtcacgtatacgtagacaggcaggg
ggaagaggtgcaggaagtcgacgccgtactagtaccagaagaccttctagtagacgaact
ggtagctttagtactagaggcggcgctggtaaagctggtggcaaacgtggcagtagcttc
agttttagttcaggtggcggtggtgccggtggcgctggaggtaaacgaaggggtggggga
actggaagtagctttagtttcggatctggtggcgctggtggtggcggtgctggaggtggt
ggtgccggaggtgccggaggtaaacgaaggggtggtggaactggaagtagcttcagcttc
ggatctggtggtgccggtggtggcggcggcggcggtggtgctggtggtggtgctggtggt
ggtgcaggtggtgctggtggtgctggtggtgctggtggtggtgccggtggtaaacgaagg
ggtggtggaactggaagtagctttagtttcggatctggtggcgctggtggtggcggcgct
ggaggtggtggtgccggaggtgccggaggtgccggaggtaaacgaaggggtggtggaact
ggaagtagcttcagcttcggatctggtggtgccggtggtggcggtgctggaggcggtggt
gccggtggtgccggaggtgccggaggtgccggaggtgccggtggtaaacgaaggggtggt
ggaactggaagtagctttagtttcggatctggtggcgctggtggtgccggtggcggtggt
gctggaggtgccggaggtaaacgaaggggtggtggaactgggagtagctttagtttcgga
tctggtggcgctggtggtgccggtggcggtggtgctggaggcggtggtgccggtggtgcc
ggtggtgccggtggtaaacgaaggggtggtggaactggaagtagctttacctttgggacc
ggtggtacagggggaacaggtggcacaggagggacagggggcaaaacaggcactttcacc
ttcggtactggaggatctggaggaaccgggggaaagaccagtggaagcactttcactttt
ggttcaggtggtacaggtggtacaggtggaaaaactagtggaggcagtttcacgtttggc
actggaggtaagagagggactggtggaaccggtggtacaggtggaacaggtggaaaaacc
agtggaagcactttcacttttggttcaggcggtacaggtggtacgggtggtactggtggt
acaggtggaaaaactagtggaggcagtttcacgtttggcactggaggtaagagagggact
ggtggaaccggtggtacaggtggaactggtggaaaaaccggtggaagcactttcactttt
ggtacaggcggtacaggtggtacgggtggtgctggtggtacaggtggaaaaactagtgga
ggcagtttcacgtttggcactggaggtaagagagggactggtggaaccggtggtacaggt
ggaactggtggaaaaaccggtggaagcactttcacttttggtacaggcggtacaggtggt
acgggtggtacaggtggtacaggtggaaaaactagtggaagcagtttcacgtttggcact
ggtggtacaggtggtacaggtggtacaggtggtacaggtggtacaggtggaaagaccagt
ggaggcagtttcacttttggcagtggtggtggagctggtggagctggtggaggtggtggt
tctggcggttctggcggttcaggtggtaagaccagcggaggcagtttcagttttgggtca
agcggaacaggaggaaaaacgggagggaaaacaggaggaggttttgcatttggctctggg
acagctggcacaaaaacaagtggttccagctctggttccactgtttccgataaagatttg
aacattggttcaagatccggcagcggaggttccggtagtagttcatggagtagctcttct
aggagtggttcgtcagggactggtggtagtggggctagtggtactgctggtggggctagt
ggtactagaggtacagccggcacagcaggtacagccggtagagggtcatctagtggaaca
cggtcatatggcacatctggagcgtcaggtagtcgaactcgaagttccggttccagtagg
tcttcttcctctagaggcagcagtcgttcctacagtacttcttccaggggtcgttctagg
agtagtggttctagcggcagacgccgcactgcccagaacacacaaggcaatgtcaaggcc
ggacccgccttctctccacagtactactcaccaggtgcacctggcccacgtggaccacct
ggccctcctggacaacctggaccccagggattccaaggaacgcgcggagaatctggcgat
ccaggtccacccggttcccctggacaacgtggatttgctggccccccaggtccccccggt
cttgatggcgaagaaggtatgcctggagatcctggcccagccggagctcttggagcacct
ggagcagctggacgcccaggaatgccaggaatgcctggacccaaaggacacagaggagca
tctggtcgtcccggccgtgacggagaacaaggaaagcagggagagaaaggtattcccggt
gcagctggagcccctggagcttctggacctcagggaccccgtggatcccccggagagaga
ggccgtgacggaagtcccggtgcccccggtatccgtggagaagatggtatggctggtaat
gttggacccgcaggacctattggaccccccggagcccccggattccccggatcatctgga
gctaagggagatgcaggtcagtctggagatcgtggcccaatgggagcccagggtgccccc
ggaaacaatggcgctgccggacaacctggtcagcctggaaggcctggttcccctggtgat
gatggcaatcctggtactaagggcgagatgggaccggctggtggacccggttctcctggc
ttcccaggaccccaaggacctcccggagccgcaggtgcccccggtcctgcaggaggcaag
ggagatcagggacgtgatggaagccccggaagccagggagaggttggagctgctggtcaa
cccggtgcacaaggagagagaggtctgcctggacttcctggtcaggagggaaagagggga
gccactggagccggtggaccccccggccccccaggaccaagcggtgaaaggggacttccc
ggaactcccggaatgactggacgccccggcgctgcaggagttcctggaaaggatggagca
cgtggtctccagggagaacgcggagaggctggacagcaaggtgtacctggacccccagga
agcgctggacaaaccggagctcgtggtgccccaggattgtctggtgctgacggtgcccct
ggcgagcgtggacccgctggcaaccccggagttgatggtaacccaggagaacaaggaccc
cagggcatccagggaccaccaggtcttcagggacccgctggaaacaagggagacactggc
ccagcaggcaaggacggtgatgttggcagaccaggagcaccaggagcccgtggacccaga
ggacccgctggagaggctggtttggagggacccccaggatcacccggtgctgaaggagag
attggaccttccggacgcccaggcgagcaaggattccagggacttcccggtcccgctgga
ccccccggcgaagctggacgcccaggaccacccggtgagactggaatccccggagaggtt
ggcgcaagcggagagagaggtgaacgtggtgcccccggagaagttggtgttgctggatca
cgtggtgcaccaggagagagaggaccaagtggaccatccggagaagtcggacaagctgga
ccacccggacccgctggagctaggggagatgccggcgctcagggtcttatcggtatgcct
ggtgagagaggtccaattggacgccccggagctcaaggaaacaggggtcttactggagag
cgaggacaggatggagaacctggtcgcccaggtgaggctggacccccaggatcacccggt
cagcccggaccttctggacttgttgctgctaagggagaccgcggagaaactggacccgct
ggagagcctggcccaccaggttcatctggacagagaggacccgcaggagcccagggacca
caaggaccaactggacttgctggacctacaggagagatgggacaaccaggagatgacgga
cagactggggccaagggcgacaccggagcacgtggatacccaggcgaggctggaccaatc
ggcgcaccaggaaatgaaggacgcgagggcaggaagggcaaccgtggatctgctggtatt
cccggcaattctggaaccccaggtgacccaggacgtgctggaccccctggtgccccaggc
gctcaaggagcacccggacccgcaggagctactggactggccggagatagcggcgagcgt
ggcgagactggacctcctggtcgtgcaggtgaacctggctctcctggccttcctggtctt
gatggtgcccaaggagagagaggatctaccggactcaccggaccagctggacctgccgga
ccagtaggaccccaaggagagcgtggtgccaacggattcccaggtgctcagggagaggct
ggtgcagctggaccccccggagctgccggagagcccggacttcgtggagaaaatggaaat
gatggtgccccaggacaagccggacccccaggacctaccggacctgctggttacccagga
gagactggacaacccggatctccaggaaaggatggaccactcggagctgttggacgtcca
ggagcaaagggagctcgtggagccgctggagccactggaccaccaggacttaacggacct
gttggcgcaccaggaaactcaggacctcccggacctcagggagaacgtggcgagagggga
gaagttggccccagtggacccgctggattaaccggacaacgtggacccgctggtgcccgc
ggtgctcaaggagagaagggagaaaacggatgggatggagctaagggcgacaagggctgg
ccaggaatgcctggaccccaaggaccacccggacctctcggaagcaatggagatcccggc
ccaccaggacctcccggagttgctggccagagtggaaaagctggaagtcgcggtcgcccc
ggacgtagtggaagccccggacaacagggaccccccggaccttctggtgctcgtggacca
gctggagacgacggactctccggacccaagggaccacccggacctcctggaccaccagga
ccacctggctacggaccagtctattcacctcagccaaactggaacaagggaccagaccca
taccaatatgatgagccagagggcggcatggcagtgtatgagaacctcaacagagttaga
gaggctatcgcccgtataggacactccagactcggcagccgtacttcacctggcaagaac
tgcagggacatcaaactcagcaaccccgacttcaaggatggcgaatactggatcgatcct
aatggcgactctgctcttgacgccatcaaggtattctgcagaatggaaacccttgagact
tgtgtgaagcccaaatttagtgagtaccgccgtgaccgctggaccaaggacaccaccagt
ggccaatacttcatgagcgatgtcttcggcaaggtcaaacagttcaagtacgacatcgac
gatcgccagatgaaggttctccagttcgactcccagagcgccagacagggagtaacatac
cactgcctcaactcacacacctacggcacccgcttcatcaccgattccggcgacgaactt
gactcagctgagggtagattcaagaggtcaacatacatcgacatcctggagggagaatgt
gaaagtgtatcatccaaagataaccagtggcatagaaacagatatgaagttaggaccaac
aaatcagaactattgcctttagtcgatgtcttgctattcgatattggtggagaaaaccaa
caatttggcatcgaattaggagaggtgtgcttcagctaa
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