Haliotis asinina (tropical abalone): 137298475
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Entry
137298475 CDS
T10448
Name
(RefSeq) collagen alpha-1(II) chain-like
KO
K19719
collagen type II alpha
Organism
hasi Haliotis asinina (tropical abalone)
Pathway
hasi04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
hasi00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
137298475
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
hasi00536
]
137298475
Glycosaminoglycan binding proteins [BR:
hasi00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
137298475
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
137298475
NCBI-ProteinID:
XP_067686857
LinkDB
All DBs
Position
10:complement(7438118..7460976)
Genome browser
AA seq
1438 aa
AA seq
DB search
MRLQECVCVVVLLVVTVAAAPEKDRGCTYQGVQYENGAVWLPNKEDKCFECICDNGEAHC
SFLADCDGYASALTKEEKKMKVMAAVTGLPGEDGERGVQGPKGEQGEPGPDGTNGVPGPP
GSPGKSEMSADQAYRRYYAARFSNKAGGAAFGPQYLQAQVGPIGPRGLSGPPGPTGPQGA
RGIRGETGDSGPQGAPGSRGPPGPAGPRGPEGDSGRNGEAGAPGLPGARGGPGPSGMPGL
PGAKGHRGFPGFPGKRGEQGISGESGAVGAPGPSGAPGPVGPRGQSGERGPDGSTGPSGL
RGVDGLPGQPGAPGAMGASGPPGSPGMVGAKGEAGAKGPKGGVGPQGSRGENGMPGANGE
DGMNGPPGQPGSDGEKGTVGDPGPAGSPGFPGPRGPPGLLGSPGLPGLKGAAGAPGQAGY
KGEQGLKGSPGAPGDRGQPGAPGIQGRRGSRGGAGAAGPQGPNGERGLPGARGNPGSPGN
PGPKGEDGDAGLRGERGQTGSMGEAGRPGPPGPPGEAGAVGPPGPDGKSGSPGPIGPSGN
DGRPGEIGAPGPSGSPGQQGAQGPTGERGNPGKSGNPGQQGPRGPSGDNGPTGEMGPQGA
PGPEGEPGPRGAEGPPGGPGFQGAPGLPGPPGEAGTEGEPGTPGGPGQPGRTGNRGERGF
PGERGAMGPVGEPGPPGPVGPAGNDGERGIPGEIGVQGDVGPQGPMGMPGERGPAGEAGA
KGDDGEAGPPGPDGNTGRPGLAGPPGEPGPPGLAGPPAEKGQPGDPGYRGQSGPPGASGE
RGNAGPDGEPGYPGLPGPAGGAGMKGEAGLPGTKGEQGDAGAAGEPGSQGPAGVPGIQGR
KGPRGEQGVAGIPGEPGAPGAPGSQGLSGQQGLPGPAGPAGSPGIKGSRGSTGNMGQAGR
NGAPGQPGNPGLKGSRGEDGSPGSSGPPGPAGASGERGEPGMPGPPGETGPGGPQGPNGA
RGANGRRGSDGLPGKAGPPGPVGGPGINGPTGPSGAPGADGAPGLPGRQGEAGLVGDAGP
VGPVGLPGLQGPAGPSGAVGEAGSRGERGAIGPVGPRGPQGLRGSPGVQGEQGIDGEAGD
SGHTGDKGDPGYMGLPGLPGPEGPIGENGPPGHRGPAGERGNDGVRGQPGLPGEDGPDGP
RGAPGARGPSGEDGRRGAAGLPGNPGPPGPPGESVFGSALTGWATGSKGPGFMGDVPSAE
GEPEEARNAIKALKDVEEEIKKLRDPTGTKDAPGRTCHDLLKNNPDITNGWYFVDPNGGG
ISDAFEAECIFNGKRTETCLHPIQTGYERQHWFARKENPEAHVWFAETFDANGFFDYGMH
RSQVKYLHQMSSRARQDIAISCKNTVVIYDQAAGNHKKAVRLGSFDEEIMGPIAKKPYRF
RVKSDTCKEYNGQLGQTIIEVRGRGHRIERMPIIDVGLYDVGGEDQEFGIDIGPACFS
NT seq
4317 nt
NT seq
+upstream
nt +downstream
nt
atgcgccttcaggagtgtgtctgtgtagttgttctactggttgttacagtggcagccgcg
ccggagaaagatcgagggtgcacatatcaaggagttcagtatgagaacggagcagtttgg
ctaccaaataaagaggacaaatgttttgaatgtatttgcgacaacggcgaggcccattgt
tctttccttgctgactgtgacggttacgcctccgctctcaccaaagaagagaaaaagatg
aaggtcatggctgccgtcactggtctgcctggcgaggatggagaacggggcgtacaaggt
ccaaagggagagcaaggagagcctggtcctgatggaactaatggtgtccccggaccaccc
ggatccccagggaagagcgaaatgtcagctgaccaggcttaccgccgctactacgccgca
aggttctccaacaaggctggtggagccgccttcggacctcagtatcttcaagctcaagtt
ggccccattggaccacgtggattgtctggacctccaggacccaccggaccccaaggagcc
cgtggaatcaggggcgaaactggagacagtggaccacagggagcgcccggaagccgtgga
cctccaggcccagctggacctcgcggacctgagggcgacagtggacgtaatggtgaagca
ggagctccaggtctccccggcgctaggggaggccctggaccatctggtatgcctggactt
cctggtgccaagggacatagaggcttccctggcttccccggaaaacgtggagagcagggt
atttcaggagagagtggtgccgtcggtgccccaggtccatctggagctcctggcccagtt
ggtccccgtggtcagtctggcgagaggggtcctgatggttctactggaccttcaggtctt
cgtggtgttgatggtcttcctggacaacctggagcccctggtgcaatgggtgcatccggt
cctcctggatcaccaggaatggttggagctaagggagaagccggtgctaaggggcctaag
ggaggagttggacctcagggatcccgtggtgaaaatggcatgcctggagctaatggagag
gacggaatgaacgggccacctggtcagcctggaagtgatggcgagaagggtaccgttgga
gacccaggtccagccggttctccaggattccctggaccccgtggaccccccggacttttg
ggaagcccaggattgcctggtcttaagggagccgccggagcccctggacaagctggatac
aaaggagaacaaggtctgaaggggtctccaggagcacctggagacagaggacaaccagga
gccccaggaatccagggaagacgtggcagccgtggtggtgctggagccgccggacctcag
ggtcccaatggagagagaggcctccctggtgcgcgtggaaatcctggaagccccggaaac
cccggacctaagggagaagatggagacgccggactccgcggagagaggggacagacaggc
tcaatgggagaggctggtcgcccaggtccccccggaccacctggtgaggcgggtgcagtt
ggaccacctggacctgatggaaaatctggatcacctggacctatcggtccatctggtaac
gatggacgccccggcgagattggtgcccccggaccctctggctccccaggacagcagggt
gctcaaggcccaactggagagagaggaaaccctggcaagtctggaaaccccggacaacaa
ggtccacgtggaccctcaggcgacaacggaccaactggtgaaatgggaccccagggagca
cctggacccgagggagagcctggccccagaggcgctgagggaccccctggaggacctgga
ttccagggagctccaggtcttcccggccccccaggagaggctggaactgagggagagccc
ggcacacccggaggaccaggtcagccaggacgtactggaaacaggggagagcgtggtttc
cccggcgaacgcggagctatgggacctgttggtgagcctggaccacccgggccagttgga
cccgctggaaatgatggcgagagaggtattcccggagaaatcggtgtccagggcgacgtt
ggtccccagggacctatgggtatgccaggagagcgaggtccagctggagaggcaggagct
aagggagacgatggtgaggcaggtcccccaggccctgatggaaacactggccgacctggt
cttgctggtcccccaggagagcctggcccacctggtcttgccggtccccctgctgagaag
ggacaacctggtgaccctggctaccgtggacagtctggcccccctggtgcctctggagag
cgcggaaatgctggccctgacggagagcccggatacccaggccttcctggtcctgccgga
ggtgcaggtatgaagggagaggcaggactgcccggaactaagggagagcaaggagatgct
ggtgctgctggtgagccaggaagtcaaggaccagctggagttcctggtattcaaggtcgc
aagggtccaagaggagagcagggtgtggctggaatccccggtgagccaggtgcccccgga
gccccaggatcccagggtctctctggtcaacaaggtctcccaggccctgctggacccgcc
ggttctcccggtatcaagggatcacgtggctccactggcaacatgggacaggctggcaga
aatggtgctcccggacaacccggaaatccaggactgaagggtagccgtggagaagacggt
tcacctggatcatctggaccccctggtcctgcaggtgcatcaggagagcgcggtgaacca
ggtatgcctggaccacctggtgaaactggacccggaggaccccaaggacctaatggagct
cgtggagctaatggacgtcgtggaagcgatggacttccaggaaaggctggaccccctgga
cccgttggaggacccggcattaacggaccaacgggaccttctggagctcccggagctgac
ggcgcccctggtcttccaggacgtcaaggcgaggctggacttgttggagatgccgggcca
gttggacccgtaggtctaccaggacttcagggacctgctggacccagcggagcagtaggc
gaggcaggctcacgtggagaaaggggagcaattggacctgttggacccagaggaccccag
ggattgagaggctctcccggagttcaaggagagcaaggcattgatggcgaggctggagat
tctggtcacactggagacaagggtgacccaggctacatgggacttcctggtctacctgga
cccgagggtccaattggagagaatggtccaccaggacatcgtggaccagctggagagaga
ggtaacgacggtgtccgtggacaacccggtcttccaggagaagacggccccgacggcccc
cgtggtgccccaggcgcccgtggacccagtggagaagatggaaggaggggtgccgccggt
cttcccgggaatccaggaccccctggaccaccaggagaaagcgtgttcggcagtgctctc
accggctgggccactggatccaagggccctggcttcatgggtgatgtgccatctgcagag
ggtgaaccagaggaggcacgtaacgccatcaaggctcttaaggatgtagaggaggagatc
aagaaactgagggatcccactggaaccaaggacgcccccggacgtacctgccatgacctg
ctcaagaacaaccctgacatcactaacggttggtacttcgttgatcctaatggtggaggc
atcagtgatgcttttgaggccgaatgtatcttcaacggaaagaggaccgagacctgctta
catccaatccaaactgggtatgagagacagcactggttcgcaaggaaggaaaacccagag
gcacacgtatggttcgccgagaccttcgacgccaacggcttcttcgactatggaatgcac
aggtctcaagttaagtacctacaccaaatgagctcacgtgctcgccaggacatcgccatc
agctgcaagaacaccgtcgtcatctacgaccaagccgctggcaaccacaagaaggctgtg
aggcttggcagtttcgatgaggagatcatgggaccaattgccaagaaaccatacagattt
agagtaaagtccgatacttgcaaggaatacaatggacagttgggacaaacaataatagaa
gtacgcggccgcggacaccgcatagaaagaatgccaattattgatgtaggactatatgat
gttgggggagaagatcaagaatttggtattgacatagggcccgcgtgcttcagctga
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