Halopseudomonas sp. SMJS2: QAO71_01315
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Entry
QAO71_01315 CDS
T10383
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
hasm Halopseudomonas sp. SMJS2
Pathway
hasm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hasm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
QAO71_01315 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hasm03021
]
QAO71_01315 (rpoC)
03400 DNA repair and recombination proteins [BR:
hasm03400
]
QAO71_01315 (rpoC)
Enzymes [BR:
hasm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
QAO71_01315 (rpoC)
Transcription machinery [BR:
hasm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
QAO71_01315 (rpoC)
DNA repair and recombination proteins [BR:
hasm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
QAO71_01315 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
WGK61917
LinkDB
All DBs
Position
279268..283467
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLLKSQGQVEEFDSIRIGLASPEMIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMGHIELASPVAHIWFLKSL
PSRIGLLLDMTLRDIERVLYFESYVVIEPGLTTLEKGQLLNDEQYFEALEEFGDEFDARM
GAEAVFELLTAMDLEHEISRLREEIPQTTSETKIKKLSKRLKLMEAFQGSGNKPEWMVMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPT
LRLHQCGLPKKMALELFKPFIFGKLEHRGLATTIKAAKKMVERELPEVWDILAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPASGEPIIVPSQDVVLGLYYMTRSRINARGEGMRFTSIAEVEMAYRSG
HVDLHSMVKVRLEETVKHKDESWTTETRIIDTTVGRALLFQILPKGLPFSLVDQPLKKKA
ISKLINTSYRIVGLKETVIFADQLMYTGFAYSTISGASIGVNDFVIPDEKARIIEDATAE
VKEIEDQYASGLVTAGEKYNKVIDLWSKANDEISKAMMDNLKSTRVLDRDGKEVEQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIIANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVITEVDCGTDQGLVMKPHIEGGDIVEPLGERVL
GRVIARDVFKPGTEDVIVAGGTLIDEQWVEFLELNSVDEVIVRSPITCETRYGVCSTCYG
RDLARGHQINIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTAAQDSIQVKSAGTIRL
HNLKHVTRDDGALVAVSRSGELALADEFGRERERYKLPYGAVISIHESDKVQAGQVVAKW
DPHTHPIVTEIAGTVQFVGMEEGITIRRQTDELTGLSNIEVMAVHERPSAGKDIRPTMKL
IGADGKELMLPGTDVPAQYFLPEKTQVNLSDGVQVTIGDVLARIPQETSKTRDITGGLPR
VADLFEARRPKEPSILAEVSGTISFGKETKGKRRLVITPNDGSDPYEELIPKWRHLNVFE
GEQVTKGEVISDGPSNPHDILRLLGVSELAKYIVNEIQDVYRLQGVKINDKHIEVTIRQM
LRKVEISESGDSSFIKGDQVELTQVLEENEALAGQDKFPAKYERVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDHLRGLKENVVVGRLIPAGTGLAYHAERKRQRTADKPAK
VSASEVEQALSDALNSSGN
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacttattgaacctgctcaagtcccagggacaagttgaagagttcgattccatt
cgaatcggcttggcatcgccggagatgatccggtcctggtcctacggcgaagtgaaaaag
ccggaaaccattaactaccgtaccttcaagccggagcgtgacggcctgttctgcgccaag
atctttggcccggtgaaggactacgagtgcctgtgcggcaagtacaagcgcctcaagcac
cgtggcgtcatctgtgaaaagtgtggcgttgaagtcgcactggccaaggtgcgtcgcgag
cgcatgggacatatcgaactggcatcgccggttgcccatatctggttcctgaaatccctg
ccgtcccgtatcggtctgctgctggacatgaccctgcgcgacatcgagcgggtactgtat
ttcgaaagctatgtcgtgatcgagcccggtctgactacgctggagaaaggccagctgctg
aacgacgaacagtacttcgaagcgctggaagaattcggtgacgagttcgatgcgcgcatg
ggtgccgaagcggtattcgagctgctgaccgccatggatctggagcacgagatcagccgg
ctgcgtgaggaaattccgcagaccacctcggaaaccaagatcaagaagctgtccaagcgg
ctgaagctgatggaagccttccagggttccggcaacaagccggagtggatggtcatgacc
gtactgccggtactgccgccggacctgcgtccgctggtaccgctggatggcggtcgtttc
gcgacttccgacctgaacgacctgtaccgtcgggtgatcaaccgtaacaaccgcctgaag
cgtctgctggatctgtccgcgccggatatcatcgtgcgcaacgaaaagcgcatgctgcag
gaatcggttgatgcgctgctggacaacggtcgtcgcggccgtgccatcaccggcaccaac
aagcgcccgctgaagtccctggccgacatgatcaagggtaagcagggccgtttccgtcag
aacctgctcggtaagcgcgttgactactccggtcgttcggtgatcgtggtaggtccgacc
ctgcgtctgcatcagtgcggtctgcccaagaagatggcgctggaactgttcaagccgttc
atcttcggcaagctggaacatcgcggcctggccaccaccatcaaggcggccaagaagatg
gttgagcgcgagctgccggaagtgtgggatatcctcgccgaggttatccgcgaacacccc
gtgctgctcaaccgtgcaccaacactgcaccgtctgggtatccaggcgttcgagccggta
ctgatcgaaggcaaggccattcaactgcacccgctggtgtgtgcggcctataacgccgac
ttcgacggtgaccagatggccgttcacgtgccgctgacgctggaagcccagctggaagcg
cgcgcgctgatgatgtcgaccaacaacatcctgtcgccggccagtggcgagccgatcatc
gtgccgtcccaggacgtggtactgggtctgtactacatgactcgttcgcgcatcaatgcg
cgtggcgaaggcatgcgtttcaccagcatcgccgaagtcgagatggcctaccgtagcggc
cacgttgacctgcactcgatggtcaaggtgcgtctcgaagagaccgtcaagcacaaggac
gagagctggaccacggaaacccgcatcatcgacaccactgtcggtcgcgcgttgctgttc
cagatcctgcccaaggggctgcccttctcgctggtcgaccagccgctgaagaagaaggcg
atttccaagctgatcaacaccagctaccggatcgtgggtctcaaggagaccgtgatcttc
gctgaccagctgatgtacaccggctttgcctattcgaccatctccggtgcctccatcggc
gtgaacgacttcgtcattcccgatgagaaggcgcggatcatcgaagatgccaccgccgag
gtgaaggaaatcgaagaccagtacgcttccggtctggttaccgccggggagaagtacaac
aaggtcatcgacttgtggtccaaggccaacgacgagatttccaaggcgatgatggacaac
ctcaagtccactcgcgtgctggatcgtgacggcaaggaagtcgagcaggagtccttcaac
tcgatgtacatgatggccgactccggtgcccggggttccgccgcacagattcgtcagttg
gcaggtatgcggggtctgatggccaagccggatggctcgatcatcgaaacgccgatcatc
gccaacttccgtgaaggtctgaacgtactccagtacttcatctccacccacggtgcccgt
aagggtctggcggatacggcactgaagaccgccaactccggttacctgactcgtcgcctg
gtcgacgtggcgcaggacctggtaatcaccgaggtcgattgcggtactgatcagggtctg
gtcatgaagccgcatatcgaaggcggcgacattgtcgagccgctgggtgagcgcgtgctg
ggtcgggtcatcgcccgtgacgtattcaagccgggtaccgaagacgtcatcgtcgccggc
ggcactttgatcgacgagcagtgggtcgagttcctcgagctgaacagtgtggacgaggtg
attgtacgctcgcccattacctgtgaaacccgctacggcgtgtgctccacctgctatggt
cgcgacctggcacgtggtcaccagatcaatatcggtgaggcggtgggtgtgatcgctgcc
cagtccattggtgagccgggtacccagctgaccatgcggacgttccacatcggtggtgct
gccagccggaccgccgcgcaggacagcattcaggtcaaaagcgccggtaccatccgcctg
cacaacctgaagcacgtgacccgtgatgacggcgcgctggtggcggtgtcccgttccggt
gagctggctctggctgacgagttcggtcgtgagcgtgagcgttacaagctgccctacggt
gcggtgatctccattcacgagagtgataaggtccaggccggccaggtggttgccaagtgg
gatccgcacactcacccgatcgttaccgagattgccggtaccgtacagttcgttggcatg
gaggagggtatcaccatccgccgtcagaccgacgaacttaccggtctgagcaacatcgaa
gtaatggcggtgcacgagcgtccatccgctggtaaggacatccgtccgaccatgaaactg
attggcgctgacggtaaggagctgatgctgccgggtaccgatgtgccggcgcagtacttc
ctgcccgagaagacccaggtcaacctgtccgatggagtgcaggtaaccattggtgacgta
ctggcacgtattcctcaggaaacgtccaagactcgcgacatcaccggtggtctgccgcgt
gttgccgatctgttcgaggcgcgtcgtccgaaggagccgtccatcctggcagaagtcagc
ggcaccatctccttcggcaaggaaaccaagggcaagcgccgtctggtcatcactccgaac
gatggcagcgatccgtacgaggagctgattccgaagtggcgccacctgaacgtgttcgaa
ggtgaacaggtcaccaagggtgaggttatctccgatggcccgagcaacccgcacgatatc
ctgcgtttgctgggtgtcagcgagctcgccaagtacatcgtcaacgaaattcaggacgtg
taccgcctgcagggtgtgaagatcaacgacaagcacatcgaggtgaccattcgccagatg
ctgcgcaaggtcgagatcagcgagtcgggtgattccagcttcatcaagggcgaccaggtc
gagctgacccaggtcctcgaagagaacgaagcgctggctggtcaggacaagttcccggcc
aagtatgagcgggtactgctgggtatcaccaaggcgtcgctgtcgaccgagtcgttcatt
tccgcggcttccttccaggaaaccacacgggtactgaccgaggctgccgttaccggtaag
cgcgatcacctgcgtggcctgaaagagaacgtggtggtgggtcgtctgattccggccggt
accggtctggcctaccacgctgagcgcaagcgtcagcgtacggccgacaagccggcgaaa
gtcagcgccagtgaagtcgagcaggccctgtcggatgcgctgaattccagcggcaactga
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integrated database retrieval system
