Halopseudomonas sp. SMJS2: QAO71_11500
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Entry
QAO71_11500 CDS
T10383
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
hasm Halopseudomonas sp. SMJS2
Pathway
hasm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hasm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QAO71_11500 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hasm03019
]
QAO71_11500 (rnr)
03016 Transfer RNA biogenesis [BR:
hasm03016
]
QAO71_11500 (rnr)
Enzymes [BR:
hasm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
QAO71_11500 (rnr)
Messenger RNA biogenesis [BR:
hasm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
QAO71_11500 (rnr)
Transfer RNA biogenesis [BR:
hasm03016
]
Prokaryotic type
tRNA degradation factors
QAO71_11500 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
OB_Dis3
AbiEi_4
LexA_DNA_bind
CSD
Motif
Other DBs
NCBI-ProteinID:
WGK60703
LinkDB
All DBs
Position
complement(2432461..2434947)
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AA seq
828 aa
AA seq
DB search
MDPAAKREAEKYENPIPSRELILKLLAERGAPATRAQLQQEFGLHDEDGIEALRRRLRAM
ERDGQLIYTRRGAYAPVDKLDLISGRVQGHRDGFGFLVPDDGGEDLFLGPSQMRIAFDGD
RVLGRVTGVDRRGRSEGAIVEVIERAHELLVGRYYEESGIGFVAADNAKIKQEVLIAPGC
SGGAKQGQYVEVKVTQWPTMSRQAQGEVIEVVGDYMAPGVEIEVALRSYDIPSVWPQEVL
DEAARLSDRVSEKDKLKRVDLRHLPLVTIDGEDARDFDDAVYCEPRKASGWRLFSGGWKL
YVAIADVSHYVPLGSALDAEAELRGTSVYFPSEVIPMLPEAISNGLCSLMPNVDRLAMVC
EMTISKSGELTDFQFYEAVIHSHARLTYNKVSSMLEHPRSREGKALSAEYAEVLPHLKSL
YDLYQALAKARHGRGAIDFETTETRMLFGKDRKITEILPTTRNDAHKIIEECMLCANVAT
ARFLQELDVPGLYRVHDGPKPEKVERLRQFLGSMGLSLTRKKGDPTPEDYAAVLAKVQDR
PDAQLIQTVMLRSLSQAVYTPHNAGHFGLNYEGYTHFTSPIRRYPDLLVHRAIRSVIRSR
KKTDLVQRSGAGVLPKAAVYPYDLAALEKLGEQCSQNERRADEATRDVVSWLKCEFMQDR
VGQNFDGLVTAVTGFGLFVELTDIYVEGLVHITALPADYYDFDQVHHQLVGERSGRTYRL
GDSIRVQVARVDLDERKIDFEMASDRPAEPDHNNSRAVREKLLSDARKAGESGSRSGKPA
RGGKTGKTGKSDRGRGAPAPAARSGGRPGGSERKPGGKPRAPRKRKVD
NT seq
2487 nt
NT seq
+upstream
nt +downstream
nt
atggatccggccgccaagcgtgaagcagagaaatacgaaaaccccatccccagtcgcgaa
ctcatcctcaaactgttggccgagcgcggtgcccctgcaacgcgggcgcaactgcaacag
gaattcggcctgcatgatgaagatggcatcgaagccctgcgccgtcgcctgcgggcgatg
gagcgtgatggccagttgatctatacccgtcgcggcgcctatgcgccggtggacaagctc
gacctgatcagcggtcgggttcagggccaccgcgatggcttcggctttctggttcccgat
gatggcggcgaagatctgttcctcgggccgtcgcagatgcgcatcgctttcgatggcgac
cgcgtgctgggacgagttaccggcgttgaccgtcgcggccgcagtgaaggggccattgtc
gaggttatcgaacgggcccacgaattgctggtcggtcgctactatgaagaaagcggcatc
ggcttcgtggcggcggacaatgccaagatcaaacaggaagtactgattgcgcccggctgt
tccggtggggcgaagcagggtcagtacgtggaagtgaaggtcactcagtggccgaccatg
agtcgtcaggctcagggtgaagtgattgaagtggtcggcgactacatggcgccgggtgtg
gaaatcgaagtggcattgcgtagctacgatattcccagcgtctggcctcaggaagtactg
gacgaggcagcgcgtctgtcagatcgcgtcagtgagaaggacaagctcaagcgagtcgac
ctgcgtcatctgccgctggtcactatcgatggcgaagacgcccgcgatttcgatgatgcc
gtgtactgcgagccgcgcaaggccagcggttggaggctgttctccggtggctggaagctc
tatgtggcgattgccgacgtgtcccattacgttccgctgggctcggcgctggatgccgaa
gccgagctgcgtggcacctcggtgtacttccccagtgaagtgattccgatgctgcccgag
gccatttccaatggtctttgctcgctgatgccgaatgtggaccgcctggccatggtttgc
gaaatgaccatctccaagagcggcgagcttactgacttccagttttacgaggcagtcatt
cactcccatgcgcgcctgacctacaacaaggtctcaagcatgctggagcacccgcgcagt
cgtgaaggcaaggcgctgagcgcggaatatgccgaagtgctgccgcacctgaagagtttg
tacgatctctatcaggcgctggccaaggcccgccatggtcgcggtgcaatcgatttcgag
accaccgaaacgcgcatgctgttcggcaaggatcgtaagatcaccgagatcctgccgact
acccgcaacgatgcgcacaagatcatcgaggaatgcatgctgtgcgccaacgtggccact
gcgcgcttcttgcaggagctggacgttcccggtctgtaccgagtgcatgacggtcccaag
ccggagaaggttgagcgcctgcgccagttccttggctcaatgggattgtcgctgacgcgc
aagaagggtgacccgacgccggaggactacgccgcagtgctggccaaggtccaggatcgc
cccgacgcccagttgatccagaccgtgatgctgcgctcgctgagccaggcggtgtatacc
ccgcacaacgccggccacttcggtctgaattacgaaggctatacccacttcacgtcgccg
atccgacgctatcccgatctgctggtgcatcgggccatccgctcggtgatccggtcgcgc
aagaagaccgatctggtgcagcgcagtggtgctggcgtgctgcccaaggcagccgtctat
ccgtacgatctggccgcgctggaaaagctcggcgagcagtgttcgcagaacgagcggcgg
gccgacgaggccacccgtgacgtggtcagctggctcaagtgcgagttcatgcaggaccgt
gtcggccagaacttcgatggtctggtcacggcagtcaccggattcggtctgttcgtcgag
ctgaccgacatctatgtggaaggtctggtgcatatcaccgccttgcctgcggattattat
gatttcgaccaggttcatcaccagctggtgggtgagcgctccgggcggacctaccgtctg
ggtgactcgattcgcgtgcaggtagcgcgggtggatctggatgaacgcaagatcgatttc
gagatggcttccgaccgtcccgcagaacctgatcacaacaacagtcgtgcggtgcgcgag
aagctgctgagcgacgcgcgcaaggctggagagtcgggctcgcggtcgggtaagccggcc
aggggcggcaagaccggtaagaccggcaagtccgaccgggggcgtggtgctcccgcaccg
gcagcccgctcgggcggtcggccgggcggtagcgagcgcaagcctggcggcaagccgcgg
gcgccgcgtaagcgcaaggtggactga
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